RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 OR8J3Q8NGG0 315 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 OR4D11Q8NGI4 311 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 OR6T1Q8NGN1 323 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 C10orf82Q8WW14 230 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 IGFBPL1Q8WX77 278 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 EPYCQ99645 322 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 CXorf56Q9H5V9 222 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 SLC17A5Q9NRA2 495 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 ARMCX1Q9P291 453 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 USF3Q68DE3 2245 aa13.75□□□□□ -0.21
VPS39-203ENST00000561797 SHISA9B4DS77 424 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 UPK3AO75631 287 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 NPPAP01160 153 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 BGLAPP02818 100 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 NQO1P15559 274 aaKnown RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 LTBQ06643 244 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 C1DQ13901 141 aaKnown RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 ENTPD8Q5MY95 495 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 KLHL17Q6TDP4 642 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 TMEM108Q6UXF1 575 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 H1FNTQ75WM6 255 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 YTHDF3Q7Z739 585 aaKnown RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 CALHM3Q86XJ0 350 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 POU5F2Q8N7G0 328 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 C1orf162Q8NEQ5 155 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 SMAP2Q8WU79 429 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 Q96MF0 132 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 ZNF317Q96PQ6 595 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 ALKBH3Q96Q83 286 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 AMBRA1Q9C0C7 1298 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 GSX1Q9H4S2 264 aaPredicted RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 DLL4Q9NR61 685 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 GID8Q9NWU2 228 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 CISD1Q9NZ45 108 aaKnown RBP13.74□□□□□ -0.21
VPS39-203ENST00000561797 B3GAT1Q9P2W7 334 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 B3GALT5Q9Y2C3 310 aa13.74□□□□□ -0.21
VPS39-203ENST00000561797 ACANP16112 2415 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ZNF587BE7ETH6 402 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 LRRN3E7EW58 273 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 MS4A18H0YCH9 400 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 FMO6PO60774 539 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 SOD3P08294 240 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 PTAFRP25105 342 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 CD40P25942 277 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 CRYBA2P53672 197 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 CDH11P55287 796 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 PRPS1P60891 318 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 RPS4XP62701 263 aaKnown RBP13.73□□□□□ -0.21
VPS39-203ENST00000561797 SLC25A3Q00325 362 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 SPOCK1Q08629 439 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 MS4A18Q3C1V0 323 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 HIKESHIQ53FT3 197 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ZNF613Q6PF04 617 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 SLC22A25Q6T423 547 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 KLHL24Q6TFL4 600 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 CCDC80Q76M96 950 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 LINGO2Q7L985 606 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 C17orf78Q8N4C9 275 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ADAMTS16Q8TE57 1224 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 RCN3Q96D15 328 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ZNF583Q96ND8 569 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 MOGAT1Q96PD6 335 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 TMEM43Q9BTV4 400 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ASPNQ9BXN1 380 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 GSX2Q9BZM3 304 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 SLC7A7Q9UM01 511 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 AMDHD2Q9Y303 409 aa13.73□□□□□ -0.21
VPS39-203ENST00000561797 ALPK2Q86TB3 2170 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 FLNAP21333 2647 aaKnown RBP13.72□□□□□ -0.21
VPS39-203ENST00000561797 OR6C65A6NJZ3 312 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 ATP8B1O43520 1251 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 CHP2O43745 196 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 FZD7O75084 574 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 SLC43A1O75387 559 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 HPRP00739 348 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 DANCRP0C864 163 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 FOSL1P15407 271 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 TNFRSF1BP20333 461 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 ATP5J2P56134 94 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 PMS2P3Q13401 168 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 MFSD13AQ14CX5 517 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 PGGHGQ32M88 737 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 SWT1Q5T5J6 900 aaKnown RBP13.72□□□□□ -0.21
VPS39-203ENST00000561797 HMBOX1Q6NT76 420 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 ERICH5Q6P6B1 374 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 LINC00114Q6XXX2 140 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 WDR88Q6ZMY6 472 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 UEVLDQ8IX04 471 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 OR1K1Q8NGR3 316 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 OR6S1Q8NH40 331 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 RASSF5Q8WWW0 418 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 PROX1Q92786 737 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 C18orf12Q96KH6 178 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 LINC00470Q9BZP3 86 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 POU2F3Q9UKI9 436 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 MGAT4BQ9UQ53 548 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 SH3GLB1Q9Y371 365 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 CORINQ9Y5Q5 1042 aa13.72□□□□□ -0.21
VPS39-203ENST00000561797 MAGED1Q9Y5V3 778 aaPredicted RBP13.72□□□□□ -0.21
VPS39-203ENST00000561797 TRAPPC13A5PLN9 417 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms