RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ANPEPP15144 967 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 NCK1P16333 377 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 PSMB1P20618 241 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 PTNP21246 168 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 GTF2E2P29084 291 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 NTF4P34130 210 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 OR1E2P47887 323 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 LTBQ06643 244 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 CCNIQ14094 377 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 DEF8Q6ZN54 512 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 CBLL1Q75N03 491 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 ADPRHL1Q8NDY3 354 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 ZNF417Q8TAU3 575 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 GEMIN6Q8WXD5 167 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 LZICQ8WZA0 190 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 FAM162AQ96A26 154 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 TMEM45BQ96B21 275 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 SLC25A36Q96CQ1 311 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 DUS3LQ96G46 650 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 SLC41A3Q96GZ6 507 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 MPP4Q96JB8 637 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 HSH2DQ96JZ2 352 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 DACH2Q96NX9 599 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 ZNF587Q96SQ5 575 aaPredicted RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 EPYCQ99645 322 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 PRSS27Q9BQR3 290 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 ZNF426Q9BUY5 554 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 SF3B5Q9BWJ5 86 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 POLR2J2Q9GZM3 115 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 POLR2J3Q9H1A7 115 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 VCXQ9H320 206 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 MCCC2Q9HCC0 563 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 FANCFQ9NPI8 374 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 ACTR3BQ9P1U1 418 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 SEC14L4Q9UDX3 406 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 EGFL7Q9UHF1 273 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 PRSS50Q9UI38 385 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 MAGEL2Q9UJ55 1249 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 RASD1Q9Y272 281 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 NOSIPQ9Y314 301 aaKnown RBP8.29□□□□□ -1.08
LDLR-211ENST00000560173 SNX13Q9Y5W8 968 aa8.29□□□□□ -1.08
LDLR-211ENST00000560173 PRR14LQ5THK1 2151 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 FAM221AA4D161 298 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 A6NNC1 897 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 ACOT8O14734 319 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 VAMP5O95183 116 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 CNOT4O95628 575 aaKnown RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 BAG2O95816 211 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 FCGR1AP12314 374 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 COX5AP20674 150 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 GRPRP30550 384 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 PTDSS1P48651 473 aaKnown RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 TAS2R41P59536 307 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 KRTAP10-9P60411 292 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 PIN1Q13526 163 aaPredicted RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 MFSD13AQ14CX5 517 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 DAZAP2Q15038 168 aaPredicted RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 P2RY6Q15077 328 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 POU4F3Q15319 338 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 IFI44LQ53G44 452 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 GLYATQ6IB77 296 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 LCN8Q6JVE9 175 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 CASP12Q6UXS9 341 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 Q6ZT83 130 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 GPAT4Q86UL3 456 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 SPATA24Q86W54 205 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 CXorf67Q86X51 503 aaPredicted RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 EPHX4Q8IUS5 362 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 ZNF100Q8IYN0 542 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 ZIC4Q8N9L1 334 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 SCAIQ8N9R8 606 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 FAM156AQ8NDB6 213 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 APH1AQ96BI3 265 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 PRRC1Q96M27 445 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 WFIKKN1Q96NZ8 548 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 MOGAT1Q96PD6 335 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 ZNF385AQ96PM9 386 aaKnown RBP8.28□□□□□ -1.08
LDLR-211ENST00000560173 SLC19A3Q9BZV2 496 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 KLHL4Q9C0H6 718 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 OR10A4Q9H209 315 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 YY1AP1Q9H869 796 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 B3GAT1Q9P2W7 334 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 NDRG3Q9UGV2 375 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 RIMS3Q9UJD0 308 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 A4GNTQ9UNA3 340 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 B3GALT5Q9Y2C3 310 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 GPR52Q9Y2T5 361 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 CORINQ9Y5Q5 1042 aa8.28□□□□□ -1.08
LDLR-211ENST00000560173 ALPK2Q86TB3 2170 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 LRRN3E7EW58 273 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 KPNA4O00629 521 aaPredicted RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 ARPC2O15144 300 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MRPL33O75394 65 aaKnown RBP8.27□□□□□ -1.09
LDLR-211ENST00000560173 CTAG2O75638 210 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 GOSR1O95249 250 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 ADAP00813 363 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 MT-ATP6P00846 226 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 IGHV3-9P01782 118 aa8.27□□□□□ -1.09
LDLR-211ENST00000560173 IFNW1P05000 195 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms