RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 TMBIM6P55061 237 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 DSTNP60981 165 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SRP54P61011 504 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ST8SIA6P61647 398 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ESRRGP62508 458 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 S100A12P80511 92 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 KLHL30Q0D2K2 578 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SELENBP1Q13228 472 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ZNF846Q147U1 533 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 DUSP7Q16829 419 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TRIM16LQ309B1 348 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CCDC58Q4VC31 144 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CAVIN4Q5BKX8 364 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 C6orf183Q5T699 404 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ATAD3BQ5T9A4 648 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 C1orf146Q5VVC0 180 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ETFRF1Q6IPR1 90 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 PRR5LQ6MZQ0 368 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CDC42EP5Q6NZY7 148 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 H2AFVQ71UI9 128 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 GPBP1Q86WP2 473 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CLVS1Q8IUQ0 354 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TTC5Q8N0Z6 440 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 NATD1Q8N6N6 113 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TRIML2Q8N7C3 387 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 LINC00469Q8N7U9 141 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 GRPEL2Q8TAA5 225 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 RAB3IL1Q8TBN0 382 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 PNPT1Q8TCS8 783 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 S100ZQ8WXG8 99 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 PTP4A1Q93096 173 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 GLYATL1Q969I3 302 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TAMM41Q96BW9 452 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 ISOC1Q96CN7 298 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CFAP36Q96G28 342 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 DCUN1D1Q96GG9 259 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 VPS35Q96QK1 796 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CIB1Q99828 191 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 BCL7BQ9BQE9 202 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 OSBPL11Q9BXB4 747 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SLC5A7Q9GZV3 580 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 GANQ9H2C0 597 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 BLZF1Q9H2G9 400 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CDC42EP4Q9H3Q1 356 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 FAM96AQ9H5X1 160 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 TMEM206Q9H813 350 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 AKIRIN1Q9H9L7 192 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 GPN2Q9H9Y4 310 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 LY9Q9HBG7 655 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SYTL2Q9HCH5 934 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 MID1IP1Q9NPA3 183 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 DDX28Q9NUL7 540 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 PARVAQ9NVD7 372 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 DCAF16Q9NXF7 216 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 STMN3Q9NZ72 180 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 XPO7Q9UIA9 1087 aaKnown RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 NUP50Q9UKX7 468 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 VANGL2Q9ULK5 521 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 CFL2Q9Y281 166 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 SNX24Q9Y343 169 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 AP4B1Q9Y6B7 739 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 MYH8P13535 1937 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 MYH13Q9UKX3 1938 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 NFASCO94856 1347 aa2.36□□□□□ -2.03
VPS13C-208ENST00000559119 MN1Q10571 1320 aaPredicted RBP2.36□□□□□ -2.03
VPS13C-208ENST00000559119 LRP6O75581 1613 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PHRF1Q9P1Y6 1649 aaKnown RBP2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ATRNO75882 1429 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ARPC4-TTLL3A0A0A6YYG9 625 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 A0A1W2PRV1 198 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ISPDA4D126 451 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 OR5K4A6NMS3 321 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 DLGAP1O14490 977 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SULT1B1O43704 296 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 ZBTB14O43829 449 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT1A9O60656 530 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 KERAO60938 352 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 GMNNO75496 209 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SPAG6O75602 509 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CLPXO76031 633 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CIAO1O76071 339 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 MYO1DO94832 1006 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SUPT7LO94864 414 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PLEKHA8P1O95397 391 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 HMGN1P05114 100 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT2B4P06133 528 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 SERPINA6P08185 405 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 POLR2MP0CAP2 368 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CALM1P0DP23 149 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CALM2P0DP24 149 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CALM3P0DP25 149 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 PSMC3P17980 439 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 IMPDH1P20839 514 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 IVDP26440 423 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 GCAP28676 217 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CD1BP29016 333 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 RRM2P31350 389 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 UGT1A5P35504 534 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CASP3P42574 277 aa2.35□□□□□ -2.03
VPS13C-208ENST00000559119 CBX5P45973 191 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms