RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MRPS23Q9Y3D9 190 aaKnown RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 PIN1P1O15428 100 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CTNSO60931 367 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 ITGA10O75578 1167 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CLEC3AO75596 197 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SC5DO75845 299 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OLFM2O95897 454 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 ADH5P11766 374 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 SLC6A6P31641 620 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 CCKBRP32239 447 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 AKR1C3P42330 323 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 UBE2IP63279 158 aaKnown RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 SHC2P98077 582 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 LTBQ06643 244 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 DEFB110Q30KQ9 67 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 FAM69AQ5T7M9 428 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OR6V1Q8N148 313 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 LNX2Q8N448 690 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 METTL27Q8N6F8 245 aaPredicted RBP10.41□□□□□ -0.74
LDLR-208ENST00000558518 PLPP7Q8NBV4 271 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 PXT1Q8NFP0 134 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 OR51A4Q8NGJ6 313 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 REG4Q9BYZ8 158 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 KIF25Q9UIL4 384 aa10.41□□□□□ -0.74
LDLR-208ENST00000558518 A0A1W2PP55 124 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 KANTRA0A1W2PQU2 76 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 DCDC2BA2VCK2 349 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 GABARAPH6UMI1 98 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 PLGP00747 810 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 AMY2AP04746 511 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 GABRA1P14867 456 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 PVALBP20472 110 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 PRKAR1BP31321 381 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 EFNB2P52799 333 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 SEC13P55735 322 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 NANOS3P60323 173 aaKnown RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 DMRTC1Q5HYR2 192 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 OLFML2AQ68BL7 652 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 LRRC69Q6ZNQ3 347 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 FAM174AQ8TBP5 190 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TMEM106AQ96A25 262 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 DPYSL5Q9BPU6 564 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 PRSS27Q9BQR3 290 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 ACTR10Q9NZ32 417 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 DEC1Q9P2X7 70 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 EDARQ9UNE0 448 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3DA0A087WVF3 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3IA0A087WXS9 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3EA0A087X179 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3KA0A087X1G2 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 A0A1B0GUH1 482 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3FA6NER0 549 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3LB9A6J9 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 C11orf98E9PRG8 122 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 SYT5O00445 386 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 GIPP09681 153 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3HP0C7X1 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 ZNF28P17035 718 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TLX1P31314 330 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 ZNF136P52737 540 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 ERV3-1Q14264 604 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 PRAMEF17Q5VTA0 474 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3GQ6DHY5 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3CQ6IPX1 549 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 TBC1D3Q8IZP1 549 aaPredicted RBP10.4□□□□□ -0.74
LDLR-208ENST00000558518 CHST4Q8NCG5 386 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 OR2AK2Q8NG84 335 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 NSMAFQ92636 917 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 SMARCD2Q92925 531 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 PPP1R14AQ96A00 147 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 MS4A4EQ96PG1 132 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 SHARPINQ9H0F6 387 aa10.4□□□□□ -0.74
LDLR-208ENST00000558518 FADS1O60427 444 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 PAPLNO95428 1278 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 FAUP35544 74 aaKnown RBP10.4□□□□□ -0.75
LDLR-208ENST00000558518 PSMD4P55036 377 aaKnown RBP10.4□□□□□ -0.75
LDLR-208ENST00000558518 EIPR1Q53HC9 387 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 ERN2Q76MJ5 926 aaKnown RBP10.4□□□□□ -0.75
LDLR-208ENST00000558518 RASGRP3Q8IV61 690 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 OR14C36Q8NHC7 312 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 NKX6-2Q9C056 277 aaPredicted RBP10.4□□□□□ -0.75
LDLR-208ENST00000558518 PCBD2Q9H0N5 130 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 SLC6A17Q9H1V8 727 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 ANKRD19PQ9H560 264 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 ST6GALNAC2Q9UJ37 374 aa10.4□□□□□ -0.75
LDLR-208ENST00000558518 FITM1A5D6W6 292 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 C5orf51A6NDU8 294 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ACOT7O00154 380 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 PRAMEF2O60811 474 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 PRAF2O60831 178 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 NFATC1O95644 943 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ADH1AP07327 375 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 UGT2B7P16662 529 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 EMDP50402 254 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 SGCGQ13326 291 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 DYRK1AQ13627 763 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 TMEM31Q5JXX7 168 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 ARHGAP40Q5TG30 622 aa10.39□□□□□ -0.75
LDLR-208ENST00000558518 FAM199XQ6PEV8 388 aaPredicted RBP10.39□□□□□ -0.75
LDLR-208ENST00000558518 JAZF1Q86VZ6 243 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms