RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 POU2F1P14859 743 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 OR3A2P47893 321 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 ERFP50548 548 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 SPIBQ01892 262 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 TRAP1Q12931 704 aaKnown RBP12.71□□□□□ -0.37
USP3-205ENST00000557884 C1DQ13901 141 aaKnown RBP12.71□□□□□ -0.37
USP3-205ENST00000557884 IQCCQ4KMZ1 466 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 TBPL2Q6SJ96 375 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 ZNF730Q6ZMV8 503 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 SLC46A3Q7Z3Q1 461 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 EPHX4Q8IUS5 362 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 ZDHHC21Q8IVQ6 265 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 ZIC4Q8N9L1 334 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 SCAIQ8N9R8 606 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 OR52J3Q8NH60 311 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 SF3B5Q9BWJ5 86 aaKnown RBP12.71□□□□□ -0.37
USP3-205ENST00000557884 KLHL4Q9C0H6 718 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 FKRPQ9H9S5 495 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 NANSQ9NR45 359 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 B3GAT1Q9P2W7 334 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 FOXD3Q9UJU5 478 aaPredicted RBP12.71□□□□□ -0.37
USP3-205ENST00000557884 B3GALT5Q9Y2C3 310 aa12.71□□□□□ -0.37
USP3-205ENST00000557884 MED12LQ86YW9 2145 aa12.71□□□□□ -0.38
USP3-205ENST00000557884 A0A087WUU8 490 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 C11orf98E9PRG8 122 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 MS4A18H0YCH9 400 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 EBAG9O00559 213 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 PLPP3O14495 311 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 MRPL33O75394 65 aaKnown RBP12.7□□□□□ -0.38
USP3-205ENST00000557884 OR7A10O76100 309 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 VAMP5O95183 116 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 OR6A2O95222 327 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 ADORA3P0DMS8 318 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 IFI30P13284 250 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 ITGA2P17301 1181 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 IGFBP2P18065 325 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 FUT1P19526 365 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 AHCYP23526 432 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 CD79BP40259 229 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 FLOT2Q14254 428 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 MS4A18Q3C1V0 323 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 PODNL1Q6PEZ8 512 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 CREB3L2Q70SY1 520 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 AAED1Q7RTV5 226 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 SPATA24Q86W54 205 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 NRMQ8IXM6 262 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 DMRTC2Q8IXT2 367 aaPredicted RBP12.7□□□□□ -0.38
USP3-205ENST00000557884 ADPRHL1Q8NDY3 354 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 OR5J2Q8NH18 312 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 LINC01560Q8TB33 94 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 ACOT11Q8WXI4 607 aaPredicted RBP12.7□□□□□ -0.38
USP3-205ENST00000557884 APH1AQ96BI3 265 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 OXGR1Q96P68 337 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 ENKD1Q9H0I2 346 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 LRMDAQ9H2I8 198 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 IL1RAPQ9NPH3 570 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 SLC7A8Q9UHI5 535 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 ZNF229Q9UJW7 825 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 POMPQ9Y244 141 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 UNC79Q9P2D8 2635 aa12.7□□□□□ -0.38
USP3-205ENST00000557884 TRBV4-1A0A0J9YWV2 114 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 HIST1H2ABP04908 130 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 ASAH2BP0C7U1 165 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 HLA-DOBP13765 273 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 ZNF43P17038 809 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 CCKARP32238 428 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 CLDN17P56750 224 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 CHRNB3Q05901 458 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 PUDPQ08623 228 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 SEC23BQ15437 767 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 TSC22D1Q15714 1073 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 FAM98BQ52LJ0 330 aaKnown RBP12.69□□□□□ -0.38
USP3-205ENST00000557884 ANKRD34AQ69YU3 496 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 BEND4Q6ZU67 534 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 MBOAT2Q6ZWT7 520 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 HIST3H2AQ7L7L0 130 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 NANOGNBQ7Z5D8 188 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 CXorf67Q86X51 503 aaPredicted RBP12.69□□□□□ -0.38
USP3-205ENST00000557884 KIF18BQ86Y91 864 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 UEVLDQ8IX04 471 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 UBE2J2Q8N2K1 259 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 SLC7A13Q8TCU3 470 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 HIST1H2ACQ93077 130 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 TMEM45BQ96B21 275 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 BPIFA2Q96DR5 249 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 SPOCK3Q9BQ16 436 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 ELOVL5Q9NYP7 299 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.69□□□□□ -0.38
USP3-205ENST00000557884 CACNA1CQ13936 2221 aa12.69□□□□□ -0.38
USP3-205ENST00000557884 INTS1Q8N201 2190 aaKnown RBP12.69□□□□□ -0.38
USP3-205ENST00000557884 DCHS2Q6V1P9 2916 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 A0A1W2PRQ8 180 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 BLOC1S5-TXNDC5H3BN57 136 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 RNF13O43567 381 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 TRAF3IP2O43734 574 aaPredicted RBP12.68□□□□□ -0.38
USP3-205ENST00000557884 ADAP00813 363 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 MAKP20794 623 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 RRM2P31350 389 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 UGT2B10P36537 528 aa12.68□□□□□ -0.38
USP3-205ENST00000557884 KIR2DL3P43628 341 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms