RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	GABRA3	P34903	492 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	PCGF2	P35227	344 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	THBS4	P35443	961 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MAP3K8	P41279	467 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MTNR1A	P48039	350 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	PIK3CG	P48736	1102 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ALDH9A1	P49189	494 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC16A1	P53985	500 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC12A2	P55011	1212 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	NAAA	Q02083	359 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	GALNT1	Q10472	559 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC29A2	Q14542	456 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FAM189A2	Q15884	450 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	KCTD19	Q17RG1	926 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FAM153C	Q494X1	144 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MMEL1	Q495T6	779 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC25A53	Q5H9E4	307 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	RNASEH2B	Q5TBB1	312 aa	Known RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FRG2	Q64ET8	278 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	TMPPE	Q6ZT21	453 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	IKBIP	Q70UQ0	350 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	COMMD6	Q7Z4G1	85 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SPATA21	Q7Z572	469 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MTERF4	Q7Z6M4	381 aa	Known RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MYLK4	Q86YV6	388 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MIER2	Q8N344	545 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	OR2L13	Q8N349	312 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF527	Q8NB42	609 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	IL17RD	Q8NFM7	739 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	OR9A2	Q8NGT5	310 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FAM110D	Q8TAY7	271 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MRAP	Q8TCY5	172 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	GPR119	Q8TDV5	335 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	NRG4	Q8WWG1	115 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	CKAP2	Q8WWK9	683 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	TAF15	Q92804	592 aa	Known RBP eCLIP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	POP5	Q969H6	163 aa	Known RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	RAB39B	Q96DA2	213 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ARL5B	Q96KC2	179 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF317	Q96PQ6	595 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FRG2B	Q96QU4	278 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	KLHDC3	Q9BQ90	382 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	LMF2	Q9BU23	707 aa	Known RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF416	Q9BWM5	594 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	MRPL1	Q9BYD6	325 aa	Known RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SHCBP1L	Q9BZQ2	653 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	C11orf54	Q9H0W9	315 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	RHOJ	Q9H4E5	214 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	NARFL	Q9H6Q4	476 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF665	Q9H7R5	613 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ANKZF1	Q9H8Y5	726 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	FN3KRP	Q9HA64	309 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC35C2	Q9NQQ7	365 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	UBQLN4	Q9NRR5	601 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	SLC7A10	Q9NS82	523 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF275	Q9NSD4	429 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	NMRK1	Q9NWW6	199 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	TAS2R7	Q9NYW3	318 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	CRNN	Q9UBG3	495 aa	Predicted RBP	4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF69	Q9UC07	566 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZDHHC2	Q9UIJ5	367 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ICAM5	Q9UMF0	924 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	RNF11	Q9Y3C5	154 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	ANGPTL3	Q9Y5C1	460 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	PSAT1	Q9Y617	370 aa		4	□□□□□ -1.77
SCFD1-223	ENST00000557076	RYR2	Q92736	4967 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	GXYLT2	A0PJZ3	443 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	CCDC189	A1A4V9	331 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	LINC01548	A6NM66	108 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF716	A6NP11	495 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	MYO1G	B0I1T2	1018 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	SULT2B1	O00204	365 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	KLF11	O14901	512 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	RP2	O75695	350 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	PRB2	P02812	416 aa	Predicted RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	OPN1MW	P04001	364 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	AMY1A	P04745	511 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	CRYBA1	P05813	215 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	IFI6	P09912	130 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	CECR9	P0C854	216 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	OPN1MW2	P0DN77	364 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	OPN1MW3	P0DN78	364 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	STMN1	P16949	149 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	FKBP2	P26885	142 aa	Known RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	PRIM2	P49643	509 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	DIO1	P49895	249 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	ALDH18A1	P54886	795 aa	Known RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	SUMO3	P55854	103 aa	Predicted RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	KRTAP10-3	P60369	221 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	CSNK2A1	P68400	391 aa	Predicted RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	SSBP2	P81877	361 aa	Predicted RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	ZNF155	Q12901	538 aa	Predicted RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	FOXF1	Q12946	379 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	STEAP4	Q687X5	459 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	SUMO4	Q6EEV6	95 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	ABLIM2	Q6H8Q1	611 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	KLHL24	Q6TFL4	600 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	C9orf139	Q6ZV77	190 aa		3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	R3HCC1L	Q7Z5L2	792 aa	Known RBP	3.99	□□□□□ -1.77
SCFD1-223	ENST00000557076	AMIGO2	Q86SJ2	522 aa		3.99	□□□□□ -1.77

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