RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	MRPS10	P82664	201 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLCXD2	Q0VAA5	305 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RBM39	Q14498	530 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	BATF	Q16520	125 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SGCA	Q16586	387 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR139	Q6DWJ6	353 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	LAIR2	Q6ISS4	152 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	C12orf40	Q86WS4	652 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CCDC71	Q8IV32	467 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR2L8	Q8NGY9	312 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR2T4	Q8NH00	348 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	LINC01599	Q8WXQ3	324 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GIMAP5	Q96F15	307 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SENP5	Q96HI0	755 aa	Predicted RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR137	Q96N19	417 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SORCS2	Q96PQ0	1159 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	NRTN	Q99748	197 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC19A3	Q9BZV2	496 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNK15	Q9H427	330 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACKR4	Q9NPB9	350 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	EXOSC3	Q9NQT5	275 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	CYB5R1	Q9UHQ9	305 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBXO4	Q9UKT5	387 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	EXOG	Q9Y2C4	368 aa	Known RBP	4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	RNF215	Q9Y6U7	377 aa		4.61	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC33A1	O00400	549 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RGS11	O94810	467 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GNRH1	P01148	92 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSTB	P04080	98 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB40AL	P0C0E4	278 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PNMT	P11086	282 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF250	P15622	560 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HIST1H1C	P16403	213 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRKAR1B	P31321	381 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRHR	P34981	398 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	AKR1C3	P42330	323 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC26A5	P58743	744 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HERV-K104	P61576	105 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MELK	Q14680	651 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GNMT	Q14749	295 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	LINC00303	Q3SY05	128 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PDZD11	Q5EBL8	140 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLLU1	Q5K131	121 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM111B	Q6SJ93	734 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CPXM2	Q8N436	756 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	C12orf76	Q8N812	135 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR4D11	Q8NGI4	311 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB40A	Q8WXH6	277 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	FBXW5	Q969U6	566 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	LRIG1	Q96JA1	1093 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	NECAB3	Q96P71	396 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HINT3	Q9NQE9	182 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACSS1	Q9NUB1	689 aa	Predicted RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLHL42	Q9P2K6	505 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TES	Q9UGI8	421 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MED16	Q9Y2X0	877 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ATG4B	Q9Y4P1	393 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A1W2PQU0	124 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	SULT1C2	O00338	296 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	DVL2	O14641	736 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	EGF	P01133	1207 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	IGHA2	P01877	340 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	LPL	P06858	475 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HOXB5	P09067	269 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ITGB7	P26010	798 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	BDKRB2	P30411	391 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GNRHR	P30968	328 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	BSG	P35613	385 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MVD	P53602	400 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLDN6	P56747	220 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDK5	Q00535	292 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MEF2D	Q14814	521 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	CHRDL2	Q6WN34	429 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRIL	Q7L0X0	811 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB11FIP2	Q7L804	512 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF687	Q8N1G0	1237 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR52H1	Q8NGJ2	320 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR4K15	Q8NH41	348 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM174A	Q8TBP5	190 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRMT2B	Q96GJ1	504 aa	Known RBP	4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TGM7	Q96PF1	710 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAD9A	Q99638	391 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRRT1	Q99946	306 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	PBDC1	Q9BVG4	233 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	UBQLN3	Q9H347	655 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	KLK11	Q9UBX7	282 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	GMEB2	Q9UKD1	530 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNS2	Q9ULS6	477 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	HIF3A	Q9Y2N7	669 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MEIKIN	A0A087WXM9	373 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	LOC100289279	A0A1B0GTE1	492 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	ANTXRL	A6NF34	631 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM235	A6NFC5	223 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRIM64B	A6NI03	449 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR6C65	A6NJZ3	312 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	RFXAP	O00287	272 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAN2B1	O00754	1011 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	IGF2	P01344	180 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	THEGL	P0DJG4	465 aa		4.6	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR13C7	P0DN81	318 aa		4.6	□□□□□ -1.67

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