RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PSMA6P60900 246 aaKnown RBP13.65□□□□□ -0.22
CUX1-215ENST00000556210 TPBGQ13641 420 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 AKIRIN2Q53H80 203 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 FAM69BQ5VUD6 431 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 NUP54Q7Z3B4 507 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 MARCH3Q86UD3 253 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ZNF680Q8NEM1 530 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 OR5AK2Q8NH90 309 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 B3GAT2Q9NPZ5 323 aa13.65□□□□□ -0.22
CUX1-215ENST00000556210 ARPC1BO15143 372 aaKnown RBP13.64□□□□□ -0.23
CUX1-215ENST00000556210 OR1D5P58170 312 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 AP3S2P59780 193 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 GALEQ14376 348 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 NKPD1Q17RQ9 610 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 TIGD3Q6B0B8 471 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 RPL13AP3Q6NVV1 102 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 SIAH3Q8IW03 269 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 CA13Q8N1Q1 262 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ELMOD3Q96FG2 381 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 SEMA4CQ9C0C4 833 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 RPH3AQ9Y2J0 694 aaPredicted RBP13.64□□□□□ -0.23
CUX1-215ENST00000556210 CIB4A0PJX0 185 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 SERINC4A6NH21 518 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 POM121CA8CG34 1229 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 GTF2F2P13984 249 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 SFTPDP35247 375 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 STARP49675 285 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ARFIP1P53367 373 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 RAB38P57729 211 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 GMFBP60983 142 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 DUSP8Q13202 625 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 BTN1A1Q13410 526 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 DGAT2L6Q6ZPD8 337 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 CASTOR1Q8WTX7 329 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 NARFLQ9H6Q4 476 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 METTL17Q9H7H0 456 aaPredicted RBP13.64□□□□□ -0.23
CUX1-215ENST00000556210 TESQ9UGI8 421 aaKnown RBP13.64□□□□□ -0.23
CUX1-215ENST00000556210 AK1P00568 194 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 TCRBP04435 133 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ALDOBP05062 364 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 VAMP1P23763 118 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 CD38P28907 300 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 PTH2RP49190 550 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ADAM8P78325 824 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 DEFA5Q01523 94 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 GLYR1Q49A26 553 aaPredicted RBP13.64□□□□□ -0.23
CUX1-215ENST00000556210 FCRL6Q6DN72 434 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ZNF425Q6IV72 752 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 WDR88Q6ZMY6 472 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 FCAMRQ8WWV6 532 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 ZDHHC12Q96GR4 267 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 FOXQ1Q9C009 403 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 DUSP22Q9NRW4 184 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 EVA1BQ9NVM1 165 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 FLVCR2Q9UPI3 526 aa13.64□□□□□ -0.23
CUX1-215ENST00000556210 A0A1W2PQF6 199 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 PDCD5O14737 125 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SLC35E2P0CK97 266 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 RORAP35398 523 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 FNTBP49356 437 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 ZIC1Q15915 447 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 CBLN3Q6UW01 205 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 LRRC69Q6ZNQ3 347 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 ZNF101Q8IZC7 436 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SYNPRQ8TBG9 265 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 OR11A1Q9GZK7 315 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 RABL2AQ9UBK7 228 aaPredicted RBP13.63□□□□□ -0.23
CUX1-215ENST00000556210 DTX4Q9Y2E6 619 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 NUBP2Q9Y5Y2 271 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SIRT4Q9Y6E7 314 aaPredicted RBP13.63□□□□□ -0.23
CUX1-215ENST00000556210 PPM1BO75688 479 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 RECKO95980 971 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 MSL3P1P0C860 447 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SLC6A9P48067 706 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 VASNQ6EMK4 673 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 GIMAP1Q8WWP7 306 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 ZNF681Q96N22 645 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 NPIPA5E9PKD4 350 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 TBXA2RP21731 343 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 FBLP22087 321 aaKnown RBP13.63□□□□□ -0.23
CUX1-215ENST00000556210 NUP62P37198 522 aaPredicted RBP13.63□□□□□ -0.23
CUX1-215ENST00000556210 GAB4Q2WGN9 574 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 FOXRED2Q8IWF2 684 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 NPRL2Q8WTW4 380 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 TMEM106AQ96A25 262 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 CFHR5Q9BXR6 569 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 NXF5Q9H1B4 397 aaKnown RBP13.63□□□□□ -0.23
CUX1-215ENST00000556210 EXO5Q9H790 373 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SLC2A4RGQ9NR83 387 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 CMC2Q9NRP2 79 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SCML1Q9UN30 329 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 NPIPA1Q9UND3 350 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 SPTA1P02549 2419 aa13.63□□□□□ -0.23
CUX1-215ENST00000556210 UCHL1P09936 223 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 NRG3P56975 720 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 ACTA2P62736 377 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 ACTG2P63267 376 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 HBMQ6B0K9 141 aa13.62□□□□□ -0.23
CUX1-215ENST00000556210 MRM1Q6IN84 353 aaKnown RBP13.62□□□□□ -0.23
CUX1-215ENST00000556210 PTP4A1Q93096 173 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms