RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 OR2T7P0C7T2 308 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 NR2C1P13056 603 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 CFL1P23528 166 aaKnown RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 PTPN6P29350 595 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 GRK5P34947 590 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 S100A10P60903 97 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 DUSP2Q05923 314 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 KCNJ8Q15842 424 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 MEP1BQ16820 701 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 ABHD12BQ7Z5M8 362 aaPredicted RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR2T27Q8NH04 317 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 SLC2A12Q8TD20 617 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 PNPLA2Q96AD5 504 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 BRINP1O60477 761 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 THBS1P07996 1170 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 PRSS3P35030 304 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 PCBP3P57721 371 aaKnown RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 FZD2Q14332 565 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 RNF165Q6ZSG1 346 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR4Q3Q8NH05 313 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 STT3BQ8TCJ2 826 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 OSGIN1Q9UJX0 560 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 POMT2Q9UKY4 750 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 A0A0G2JMP0 313 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 A0A0X1KG70 313 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 IDSB3KWA1 339 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 NSA2O95478 260 aaKnown RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 CT62P0C5K7 136 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 AWAT2Q6E213 333 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 LRRC28Q86X40 367 aaPredicted RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR4M2Q8NGB6 313 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR5T2Q8NGG2 359 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR14A16Q8NHC5 309 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 ANKRD19PQ9H560 264 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 EXO1Q9UQ84 846 aaKnown RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 ZNF281Q9Y2X9 895 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 OR2AT4A6NND4 320 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 WRBO00258 174 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 LILRB5O75023 590 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 SLC2A1P11166 492 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 HLA-DMAP28067 261 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 HOXC12P31275 282 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 ZNF84P51523 738 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 MANEAQ5SRI9 462 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 LSRQ86X29 649 aaPredicted RBP13.78□□□□□ -0.2
CUX1-214ENST00000550008 ELMOD2Q8IZ81 293 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 DNAAF1Q8NEP3 725 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 ITPKCQ96DU7 683 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 FBXL4Q9UKA2 621 aa13.78□□□□□ -0.2
CUX1-214ENST00000550008 IGHV5-51A0A0C4DH38 117 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 OR10A3P58181 314 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 DCDP81605 110 aaKnown RBP13.77□□□□□ -0.2
CUX1-214ENST00000550008 ABCA11PQ4W5N1 156 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 RNASE10Q5GAN6 216 aaKnown RBP13.77□□□□□ -0.2
CUX1-214ENST00000550008 GARNL3Q5VVW2 1013 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 SLC16A12Q6ZSM3 486 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 NDUFAF7Q7L592 441 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 OR4M1Q8NGD0 313 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 SP7Q8TDD2 431 aaPredicted RBP13.77□□□□□ -0.2
CUX1-214ENST00000550008 APH1BQ8WW43 257 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 DUSP23Q9BVJ7 150 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 RDH8Q9NYR8 311 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 PLEK2Q9NYT0 353 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 GREB1Q4ZG55 1949 aa13.77□□□□□ -0.2
CUX1-214ENST00000550008 A0A1B0GX78 115 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 M0R233 179 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 ICOSLGO75144 302 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 DNAJB6O75190 326 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 FARS2O95363 451 aaKnown RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 WDPCPO95876 746 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 SF3A2Q15428 464 aaKnown RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 NIPAL3Q6P499 406 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 RPL22L1Q6P5R6 122 aaKnown RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 C16orf47Q6ZP98 133 aaPredicted RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 CLDN22Q8N7P3 220 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 NAT6Q93015 286 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 SLC39A1Q9NY26 324 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 MGAT4AQ9UM21 535 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 TMEM129A0AVI4 362 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 EPOPA6NHQ4 379 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 AKR1C4P17516 323 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 CASP3P42574 277 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 GZMMP51124 257 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 EEF1A1P68104 462 aaKnown RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 LIPNQ5VXI9 398 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 GALNT11Q8NCW6 608 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 ZNF486Q96H40 463 aaPredicted RBP13.77□□□□□ -0.21
CUX1-214ENST00000550008 POTEKPQ9BYX7 375 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 CMC2Q9NRP2 79 aa13.77□□□□□ -0.21
CUX1-214ENST00000550008 NSG1A0A0A6YYJ2 146 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 TRDV1A0A1B0GX56 115 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 CREBL2O60519 120 aaPredicted RBP13.76□□□□□ -0.21
CUX1-214ENST00000550008 CBX5P45973 191 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 SRP9P49458 86 aaKnown RBP13.76□□□□□ -0.21
CUX1-214ENST00000550008 CEBPGP53567 150 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 EFR3AQ14156 821 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 MFSD13AQ14CX5 517 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 SPIN3Q5JUX0 258 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 GPR139Q6DWJ6 353 aa13.76□□□□□ -0.21
CUX1-214ENST00000550008 TMEM17Q86X19 198 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms