RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 USE1Q9NZ43 259 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 IL20RAQ9UHF4 553 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 ZNF229Q9UJW7 825 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 CAMK2AQ9UQM7 478 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 TRAPPC4Q9Y296 219 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 TMEM5Q9Y2B1 443 aa8.36□□□□□ -1.07
DDX55-208ENST00000541259 BLOC1S5-TXNDC5H3BN57 136 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 PLPP3O14495 311 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 FZD7O75084 574 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 SNAP29O95721 258 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 HPRP00739 348 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 MT-ATP6P00846 226 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 IGFBP5P24593 272 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 EPHA2P29317 976 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 PTGS2P35354 604 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 POLR2IP36954 125 aaKnown RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 P2RY4P51582 365 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 RAC3P60763 192 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 SLC35A1P78382 337 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 PMS2P3Q13401 168 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 C11orf91Q3C1V1 193 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 ARHGAP11AQ6P4F7 1023 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 CD300LDQ6UXZ3 194 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 Q6ZPB1 254 aaPredicted RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 RASSF6Q6ZTQ3 369 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 MAMDC2Q7Z304 686 aaPredicted RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 OAFQ86UD1 273 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 IGFN1Q86VF2 1251 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 OR8D4Q8NGM9 314 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 OR5J2Q8NH18 312 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 CPT1CQ8TCG5 803 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 SARAFQ96BY9 339 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 SAMD8Q96LT4 415 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 ASPNQ9BXN1 380 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 PLA2G12AQ9BZM1 189 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 PRDM14Q9GZV8 571 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 FKRPQ9H9S5 495 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 ZNF556Q9HAH1 456 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 CHST11Q9NPF2 352 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 KRCC1Q9NPI7 259 aaPredicted RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 PAPOLBQ9NRJ5 636 aaKnown RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 ALKBH4Q9NXW9 302 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 MRPL39Q9NYK5 338 aaKnown RBP8.35□□□□□ -1.07
DDX55-208ENST00000541259 TAS2R5Q9NYW4 299 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 SIGLEC7Q9Y286 467 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 KALRNO60229 2985 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 ESPL1Q14674 2120 aa8.35□□□□□ -1.07
DDX55-208ENST00000541259 HTR3EA5X5Y0 456 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 OR14I1A6ND48 311 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 CLCA1A8K7I4 914 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 MCIDASD6RGH6 385 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 C11orf98E9PRG8 122 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 SMAD9O15198 467 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 PRB1P04280 392 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 HIST1H2ABP04908 130 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 F13BP05160 661 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 TSPAN19P0C672 248 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 ADORA3P0DMS8 318 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 OSMP13725 252 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 HLA-DOBP13765 273 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 GSTM3P21266 225 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 POU1F1P28069 291 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 UQCRC1P31930 480 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 VHLP40337 213 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 SLC9A3P48764 834 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 AGFG1P52594 562 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 AQP4P55087 323 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 NUP107P57740 925 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 RPS3AP61247 264 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 RPS4XP62701 263 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 CSNK2A1P68400 391 aaPredicted RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 H3F3AP84243 136 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 RPL18Q07020 188 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 COX10Q12887 443 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 SGCBQ16585 318 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 ZNF239Q16600 458 aaKnown RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 SLC36A3Q495N2 470 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 PDSS1Q5T2R2 415 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 WLSQ5T9L3 541 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 TMEM236Q5W0B7 351 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 ZNF585AQ6P3V2 769 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 GFRALQ6UXV0 394 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 ZNF620Q6ZNG0 422 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 H1FNTQ75WM6 255 aaPredicted RBP8.34□□□□□ -1.07
DDX55-208ENST00000541259 HIST3H2AQ7L7L0 130 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 NANOGNBQ7Z5D8 188 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 PACRGLQ8N7B6 248 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 LRRC75AQ8NAA5 344 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 HIST1H2ACQ93077 130 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 MBOAT4Q96T53 435 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 OR52D1Q9H346 318 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 TOR3AQ9H497 397 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 RIBC2Q9H4K1 309 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 KLHL13Q9P2N7 655 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 POFUT2Q9Y2G5 429 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 HIF3AQ9Y2N7 669 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 POLEQ07864 2286 aa8.34□□□□□ -1.07
DDX55-208ENST00000541259 AQP7P3A6NL99 342 aa8.33□□□□□ -1.08
DDX55-208ENST00000541259 BCKDKO14874 412 aa8.33□□□□□ -1.08
DDX55-208ENST00000541259 EIF1BO60739 113 aaKnown RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms