RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LSP1P33241 339 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 SELENOPP49908 381 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 ADAM8P78325 824 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 BSPH1Q075Z2 132 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 LGALS3BPQ08380 585 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 MS4A18Q3C1V0 323 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 ENTPD8Q5MY95 495 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 C1QTNF12Q5T7M4 302 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 OR7E24Q6IFN5 339 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 HACD2Q6Y1H2 254 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 H1FNTQ75WM6 255 aaPredicted RBP12.47□□□□□ -0.41
USP28-209ENST00000540925 LINGO2Q7L985 606 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 TGIF2LYQ8IUE0 185 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 SLC15A3Q8IY34 581 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 KDM8Q8N371 416 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 SCAIQ8N9R8 606 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 POMGNT2Q8NAT1 580 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 ADAMTS16Q8TE57 1224 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 SLC25A36Q96CQ1 311 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 OXGR1Q96P68 337 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 MOGAT1Q96PD6 335 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 SLCO5A1Q9H2Y9 848 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 UBTD1Q9HAC8 227 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 NGBQ9NPG2 151 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 GMPR2Q9P2T1 348 aaKnown RBP12.47□□□□□ -0.41
USP28-209ENST00000540925 RCE1Q9Y256 329 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 CORINQ9Y5Q5 1042 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 DSCAMO60469 2012 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 HS3ST1O14792 307 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 SNX3O60493 162 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 HPRP00739 348 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 PAX1P15863 534 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 SLC25A3Q00325 362 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 MFSD13AQ14CX5 517 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 STK11Q15831 433 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 MICU2Q8IYU8 434 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 TMEM123Q8N131 208 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 LRRC75A-AS1Q8N1F1 130 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 C17orf78Q8N4C9 275 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 ZNF611Q8N823 705 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 OR2T12Q8NG77 320 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 PIGTQ969N2 578 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 MUCL1Q96DR8 90 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 EPYCQ99645 322 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 ELAC2Q9BQ52 826 aaKnown RBP12.46□□□□□ -0.41
USP28-209ENST00000540925 PRSS27Q9BQR3 290 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 LINC00470Q9BZP3 86 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 ESRP2Q9H6T0 727 aaKnown RBP12.46□□□□□ -0.41
USP28-209ENST00000540925 DLL4Q9NR61 685 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 MRPL39Q9NYK5 338 aaKnown RBP12.46□□□□□ -0.41
USP28-209ENST00000540925 RNF115Q9Y4L5 304 aa12.46□□□□□ -0.41
USP28-209ENST00000540925 ACANP16112 2415 aa12.46□□□□□ -0.42
USP28-209ENST00000540925 CIB4A0PJX0 185 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 TRAPPC13A5PLN9 417 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 OR6C65A6NJZ3 312 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 CPSF4LA6NMK7 179 aaKnown RBP12.45□□□□□ -0.42
USP28-209ENST00000540925 SHISA9B4DS77 424 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 LRRN3E7EW58 273 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 NME4O00746 187 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 DANCRP0C864 163 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 KDELR2P33947 212 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 ZNF672Q499Z4 452 aaPredicted RBP12.45□□□□□ -0.42
USP28-209ENST00000540925 ARPINQ7Z6K5 226 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 CARM1Q86X55 608 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 ANKK1Q8NFD2 765 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 VANGL1Q8TAA9 524 aaPredicted RBP12.45□□□□□ -0.42
USP28-209ENST00000540925 AKAP1Q92667 903 aaKnown RBP eCLIP12.45□□□□□ -0.42
USP28-209ENST00000540925 MPP4Q96JB8 637 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 SLC19A3Q9BZV2 496 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 SLC17A5Q9NRA2 495 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 SELENONQ9NZV5 590 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 UPB1Q9UBR1 384 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 BAG5Q9UL15 447 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 AP3M1Q9Y2T2 418 aa12.45□□□□□ -0.42
USP28-209ENST00000540925 ELOVL7A1L3X0 281 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 RPL36A-HNRNPH2H7BZ11 118 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 TMCC2O75069 709 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 UPK3AO75631 287 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 MT-ATP6P00846 226 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 CD3EP07766 207 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 HLA-DOBP13765 273 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 ZNF43P17038 809 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 TNFRSF1BP20333 461 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 PTNP21246 168 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 GYS2P54840 703 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 ZNF74Q16587 644 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 CYBRD1Q53TN4 286 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 ALKBH2Q6NS38 261 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 WDFY1Q8IWB7 410 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 WFDC11Q8NEX6 87 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 KBTBD8Q8NFY9 601 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 OR52N5Q8NH56 324 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 SLC26A7Q8TE54 656 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 NEUROG1Q92886 237 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 OR2M2Q96R28 347 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 CCL19Q99731 98 aa12.44□□□□□ -0.42
USP28-209ENST00000540925 HOPXQ9BPY8 73 aaPredicted RBP12.44□□□□□ -0.42
USP28-209ENST00000540925 POLR2J2Q9GZM3 115 aaKnown RBP12.44□□□□□ -0.42
USP28-209ENST00000540925 POLR2J3Q9H1A7 115 aaKnown RBP12.44□□□□□ -0.42
USP28-209ENST00000540925 NELFAQ9H3P2 528 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms