RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 METTL21AQ8WXB1 218 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 ST8SIA1Q92185 356 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 GHSRQ92847 366 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 RASD2Q96D21 266 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 ARSGQ96EG1 525 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 PELI1Q96FA3 418 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 KLHL15Q96M94 604 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 NMNAT3Q96T66 252 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 DDOQ99489 341 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 LPAR4Q99677 370 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 TIMP4Q99727 224 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 C7orf50Q9BRJ6 194 aaKnown RBP6.04□□□□□ -1.44
USP28-206ENST00000538224 ALG12Q9BV10 488 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 SEMA4CQ9C0C4 833 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 VN1R1Q9GZP7 353 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 PPP1R3EQ9H7J1 279 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 TMEM165Q9HC07 324 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 KLHL1Q9NR64 748 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 CYSLTR2Q9NS75 346 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 RBFOX1Q9NWB1 397 aaKnown RBP6.04□□□□□ -1.44
USP28-206ENST00000538224 TAS2R10Q9NYW0 307 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 AKAP7Q9P0M2 348 aaPredicted RBP6.04□□□□□ -1.44
USP28-206ENST00000538224 NCDNQ9UBB6 729 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 EXTL2Q9UBQ6 330 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 MUTYHQ9UIF7 546 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 GNG8Q9UK08 70 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 ZNF221Q9UK13 617 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 MKL2Q9ULH7 1088 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 SIT1Q9Y3P8 196 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 ADAM18Q9Y3Q7 739 aa6.04□□□□□ -1.44
USP28-206ENST00000538224 FAM240BA0A1B0GVZ2 78 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 A0A1W2PRG6 482 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 OR6C68A6NDL8 312 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 OR2W5A6NFC9 320 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ANKUB1A6NFN9 424 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 A6NIZ1 184 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NPIPB13A6NJU9 1138 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CENPXA8MT69 81 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 A8MVM7 634 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CENPBD1B2RD01 187 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NPIPB4C9JG80 1138 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 HAX1O00165 279 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 LYRM1O43325 122 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ORC5O43913 435 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FADS1O60427 444 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SELENOFO60613 162 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CCNKO75909 580 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NCR1O76036 304 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 OR6A2O95222 327 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NUDT14O95848 222 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 IGHMP01871 453 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 BGLAPP02818 100 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 HEXBP07686 556 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 GIMD1P0DJR0 217 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FOSL2P15408 326 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SPNP16150 400 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NPR2P20594 1047 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 MSX1P28360 303 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SHC1P29353 583 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 HOXD12P35452 270 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 AQP2P41181 271 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 NAA10P41227 235 aaPredicted RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 RFX2P48378 723 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 PITPNBP48739 271 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 DLX5P56178 289 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CAV3P56539 151 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SCAND1P57086 179 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RAB25P57735 213 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RAP1BP61224 184 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RAP1AP62834 184 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 DAB2P98082 770 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 E2F1Q01094 437 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CFHR1Q03591 330 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CSTF1Q05048 431 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 RPL18Q07020 188 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 SRSF5Q13243 272 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 NKAIN1Q4KMZ8 207 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 FAM69AQ5T7M9 428 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 C1orf189Q5VU69 101 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RSBN1Q5VWQ0 802 aaPredicted RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 PMS2CLQ68D20 193 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 BICRALQ6AI39 1079 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 DNM1P34Q6PK57 102 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CBLN3Q6UW01 205 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 LRRN1Q6UXK5 716 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 COX15Q7KZN9 410 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 CDH24Q86UP0 819 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 WDR5BQ86VZ2 330 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 LRRC17Q8N6Y2 441 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ZNF321PQ8N8H1 164 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 SAMD12Q8N8I0 201 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 OR5L2Q8NGL0 311 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 OR5J2Q8NH18 312 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 TRMT10AQ8TBZ6 339 aaKnown RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 STT3BQ8TCJ2 826 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 C15orf40Q8WUR7 153 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.03□□□□□ -1.44
USP28-206ENST00000538224 ASB17Q8WXJ9 295 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 ADAMTS14Q8WXS8 1223 aa6.03□□□□□ -1.44
USP28-206ENST00000538224 RFT1Q96AA3 541 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms