RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 PARVAQ9NVD7 372 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 DUS2Q9NX74 493 aaKnown RBP2.87□□□□□ -1.95
USP48-215ENST00000534705 SMPD3Q9NY59 655 aaPredicted RBP2.87□□□□□ -1.95
USP48-215ENST00000534705 SENP1Q9P0U3 644 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 RIMS3Q9UJD0 308 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 ELF5Q9UKW6 265 aaPredicted RBP2.87□□□□□ -1.95
USP48-215ENST00000534705 NUP50Q9UKX7 468 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.87□□□□□ -1.95
USP48-215ENST00000534705 NDRG2Q9UN36 371 aaKnown RBP2.87□□□□□ -1.95
USP48-215ENST00000534705 PSMD13Q9UNM6 376 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 MGAT4BQ9UQ53 548 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 AP3M1Q9Y2T2 418 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 SBDSQ9Y3A5 250 aaKnown RBP eCLIP2.87□□□□□ -1.95
USP48-215ENST00000534705 NAALAD2Q9Y3Q0 740 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 WIPI2Q9Y4P8 454 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 UGT2A1Q9Y4X1 527 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 MAB21L2Q9Y586 359 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 ANKRD12Q6UB98 2062 aa2.87□□□□□ -1.95
USP48-215ENST00000534705 CCDC88CQ9P219 2028 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 BPTFQ12830 3046 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZFHX4Q86UP3 3567 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CCDC160A6NGH7 325 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZSCAN5BA6NJL1 495 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SNTNA6NMZ2 147 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 EVPLLA8MZ36 301 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 M0QYV0 167 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PSMD12O00232 456 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 GYG2O15488 501 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZW10O43264 779 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SULT1B1O43704 296 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CACNG3O60359 315 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A9O60656 530 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CDH16O75309 829 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SPAG7O75391 227 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ATP6AP2O75787 350 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 MYO1DO94832 1006 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SNAPINO95295 136 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 H6PDO95479 791 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 KRT75O95678 551 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CPNE6O95741 557 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TTC4O95801 387 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PAHP00439 452 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ATP1B1P05026 303 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 HMGN1P05114 100 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 RETP07949 1114 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SNRPAP09012 282 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 CISD3P0C7P0 127 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 RALAP11233 206 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A6P19224 532 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 GALP22466 123 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PRKACGP22612 351 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 HOXA6P31267 233 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CDH5P33151 784 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A3P35503 534 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT1A5P35504 534 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 UGT2B10P36537 528 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ATP5C1P36542 298 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 TALDO1P37837 337 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 DNA2P51530 1060 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SGSHP51688 502 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 NDST2P52849 883 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 DSCR10P59022 87 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 YWHAGP61981 247 aaKnown RBP eCLIP2.86□□□□□ -1.95
USP48-215ENST00000534705 YWHAEP62258 255 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 IL9RQ01113 521 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 IFITM3Q01628 133 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ADIGQ0VDE8 80 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 BAMBIQ13145 260 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SNTB2Q13425 540 aaKnown RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 LY6DQ14210 128 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 GNA13Q14344 377 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PDGFRLQ15198 375 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 EXT1Q16394 746 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 CARTPTQ16568 116 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 EXOC3L4Q17RC7 722 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SNAI3Q3KNW1 292 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZNF528Q3MIS6 628 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 MOGAT2Q3SYC2 334 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 GPR33Q49SQ1 333 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 PTPN20Q4JDL3 420 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 YIF1BQ5BJH7 314 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 SYPL2Q5VXT5 272 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TTC27Q6P3X3 843 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 METAP1DQ6UB28 335 aaPredicted RBP2.86□□□□□ -1.95
USP48-215ENST00000534705 FCRLAQ7L513 359 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 BNIPLQ7Z465 357 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 GPR141Q7Z602 305 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 AMIGO1Q86WK6 493 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 ZNF677Q86XU0 584 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 TMEM25Q86YD3 366 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 HPS6Q86YV9 775 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 MISPQ8IVT2 679 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 FAM71AQ8IYT1 594 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 LINC00518Q8N0U6 118 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 RNF148Q8N7C7 305 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 FADS6Q8N9I5 356 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 NUP37Q8NFH4 326 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 STEAP2Q8NFT2 490 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 OR7A2PQ8NGA2 310 aa2.86□□□□□ -1.95
USP48-215ENST00000534705 OR6C4Q8NGE1 309 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms