RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PRR23D1E9PI22 279 aaPredicted RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 MT-ND2P03891 347 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 CD14P08571 375 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 PRR23D2P0DMB1 279 aaPredicted RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 PCMT1P22061 227 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 AQP2P41181 271 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 CDH11P55287 796 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 PIGFQ07326 219 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 RAB40BQ12829 278 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 NEDD8Q15843 81 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 ARMC4Q5T2S8 1044 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 ZNF227Q86WZ6 799 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 SCAIQ8N9R8 606 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 JSRP1Q96MG2 331 aaPredicted RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 RHNO1Q9BSD3 238 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 RNF32Q9H0A6 362 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 DKKL1Q9UK85 242 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 MRPS18CQ9Y3D5 142 aaKnown RBP19.11■□□□□ 0.65
VPS28-212ENST00000530836 IER3IP1Q9Y5U9 82 aa19.11■□□□□ 0.65
VPS28-212ENST00000530836 WISP1O95388 367 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 GTF2E2P29084 291 aaKnown RBP19.1■□□□□ 0.65
VPS28-212ENST00000530836 HTR1FP30939 366 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 SRD5A2P31213 254 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 IDUAP35475 653 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 MTNR1AP48039 350 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 MLLT10P55197 1068 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 RPL18Q07020 188 aaKnown RBP19.1■□□□□ 0.65
VPS28-212ENST00000530836 TBCEQ15813 527 aaPredicted RBP19.1■□□□□ 0.65
VPS28-212ENST00000530836 SLC35F1Q5T1Q4 408 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 C1QL3Q5VWW1 255 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 RNLSQ5VYX0 342 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 GPR139Q6DWJ6 353 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 CPOQ8IVL8 374 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 LRRC75AQ8NAA5 344 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 TM9SF4Q92544 642 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 RORBQ92753 470 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 SLC25A36Q96CQ1 311 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 TMEM80Q96HE8 168 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 GNRHR2Q96P88 292 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 FAM173AQ9BQD7 235 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 TAPBPLQ9BX59 468 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 OR11A1Q9GZK7 315 aa19.1■□□□□ 0.65
VPS28-212ENST00000530836 HINT3Q9NQE9 182 aaKnown RBP19.1■□□□□ 0.65
VPS28-212ENST00000530836 BOKQ9UMX3 212 aaPredicted RBP19.1■□□□□ 0.65
VPS28-212ENST00000530836 PCNX3Q9H6A9 2034 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 DOCK10Q96BY6 2186 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 FTCDNL1E5RQL4 147 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 FZD7O75084 574 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 NEURL1O76050 574 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 SLC2A10O95528 541 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 TXNDC12O95881 172 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 STSP08842 583 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 TFPIP10646 304 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 ITGADQ13349 1161 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 PMS2P3Q13401 168 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 ZNF362Q5T0B9 420 aaPredicted RBP19.09■□□□□ 0.65
VPS28-212ENST00000530836 MOSPD2Q8NHP6 518 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 NPAS1Q99742 590 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 PIGQQ9BRB3 760 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 KATNB1Q9BVA0 655 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 HDGFL3Q9Y3E1 203 aa19.09■□□□□ 0.65
VPS28-212ENST00000530836 CHD6Q8TD26 2715 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 OR6A2O95222 327 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 ACVR2AP27037 513 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 DCKP27707 260 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 GRPRP30550 384 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 SDHAP31040 664 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 DNASE1L1P49184 302 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 CTXN1P60606 82 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 OR1C1Q15619 314 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 SLC6A19Q695T7 634 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 SPINK14Q6IE38 97 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 PLBD1Q6P4A8 553 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 BCDIN3DQ7Z5W3 292 aaKnown RBP19.08■□□□□ 0.65
VPS28-212ENST00000530836 HAS2Q92819 552 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 MUL1Q969V5 352 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 DGCR14Q96DF8 476 aaKnown RBP19.08■□□□□ 0.65
VPS28-212ENST00000530836 BBC3Q96PG8 261 aaPredicted RBP19.08■□□□□ 0.65
VPS28-212ENST00000530836 ZFP64Q9NPA5 681 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 ACOT13Q9NPJ3 140 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 TAS2R5Q9NYW4 299 aa19.08■□□□□ 0.65
VPS28-212ENST00000530836 WARS2Q9UGM6 360 aaKnown RBP19.08■□□□□ 0.65
VPS28-212ENST00000530836 ATRXP46100 2492 aa19.08■□□□□ 0.64
VPS28-212ENST00000530836 SLC22A31A6NKX4 558 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 ZNF99A8MXY4 864 aaPredicted RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 ZIC3O60481 467 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 WDPCPO95876 746 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 C21orf33P30042 268 aaPredicted RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 ZP4Q12836 540 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 RAB39AQ14964 217 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 GTF2IRD2BQ6EKJ0 949 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 MEPCEQ7L2J0 689 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 GTF2IRD2Q86UP8 949 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 ZADH2Q8N4Q0 377 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 FAM98AQ8NCA5 519 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 FAR1Q8WVX9 515 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 ALKBH4Q9NXW9 302 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 PLA2G3Q9NZ20 509 aa19.07■□□□□ 0.64
VPS28-212ENST00000530836 TLN1Q9Y490 2541 aaKnown RBP19.07■□□□□ 0.64
VPS28-212ENST00000530836 OR5H15A6NDH6 313 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms