RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	OR9K2	Q8NGE7	335 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	OR2T29	Q8NH02	315 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	TMEM45B	Q96B21	275 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	BPIFA2	Q96DR5	249 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	RSRC1	Q96IZ7	334 aa	Known RBP	18.46	■□□□□ 0.55
CD44-222	ENST00000526025	OXGR1	Q96P68	337 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	PLSCR4	Q9NRQ2	329 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	C20orf141	Q9NUB4	165 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	C6orf203	Q9P0P8	240 aa	Predicted RBP	18.46	■□□□□ 0.55
CD44-222	ENST00000526025	KLF2	Q9Y5W3	355 aa	Predicted RBP	18.46	■□□□□ 0.55
CD44-222	ENST00000526025	LYVE1	Q9Y5Y7	322 aa		18.46	■□□□□ 0.55
CD44-222	ENST00000526025	SH3PXD2B	A1X283	911 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	FKBP6	O75344	327 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	CGA	P01215	116 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	TSPAN19	P0C672	248 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	IFI30	P13284	250 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	SLC9A3	P48764	834 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	ASCL1	P50553	236 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	ACTR3	P61158	418 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	ZP4	Q12836	540 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	PMS2P3	Q13401	168 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	CCNI	Q14094	377 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	VWA1	Q6PCB0	445 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	TMPRSS11F	Q6ZWK6	438 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	BTLA	Q7Z6A9	289 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	GALNT5	Q7Z7M9	940 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	CDK20	Q8IZL9	346 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	ALPK1	Q96QP1	1244 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	KCNJ16	Q9NPI9	418 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	B3GAT1	Q9P2W7	334 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	CLEC4A	Q9UMR7	237 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	FLVCR1	Q9Y5Y0	555 aa		18.45	■□□□□ 0.54
CD44-222	ENST00000526025	LRRN3	E7EW58	273 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	PLPP3	O14495	311 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	HIST1H2AB	P04908	130 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	NQO1	P15559	274 aa	Known RBP	18.44	■□□□□ 0.54
CD44-222	ENST00000526025	FUT1	P19526	365 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	SIRPA	P78324	504 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	PUDP	Q08623	228 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	HIST3H2A	Q7L7L0	130 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	C10orf67	Q8IYJ2	551 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	OR4K5	Q8NGD3	323 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	OR4C15	Q8NGM1	316 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	HIST1H2AC	Q93077	130 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	SLCO4A1	Q96BD0	722 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	REEP1	Q9H902	201 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	ARMC1	Q9NVT9	282 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	SEC14L4	Q9UDX3	406 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	FOXD3	Q9UJU5	478 aa	Predicted RBP	18.44	■□□□□ 0.54
CD44-222	ENST00000526025	TMCC3	Q9ULS5	477 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	PROCR	Q9UNN8	238 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	NOX1	Q9Y5S8	564 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	ICE1	Q9Y2F5	2266 aa		18.44	■□□□□ 0.54
CD44-222	ENST00000526025	MS4A18	H0YCH9	400 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	PIP5K1C	O60331	668 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	CNOT4	O95628	575 aa	Known RBP	18.43	■□□□□ 0.54
CD44-222	ENST00000526025	IFNGR2	P38484	337 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	RPS4X	P62701	263 aa	Known RBP	18.43	■□□□□ 0.54
CD44-222	ENST00000526025	SEC23B	Q15437	767 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	CDSN	Q15517	529 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	MS4A18	Q3C1V0	323 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	TBPL2	Q6SJ96	375 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	NANOGNB	Q7Z5D8	188 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	PXK	Q7Z7A4	578 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	GPAT4	Q86UL3	456 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	OR52J3	Q8NH60	311 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	LRRC46	Q96FV0	321 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	PARPBP	Q9NWS1	579 aa		18.43	■□□□□ 0.54
CD44-222	ENST00000526025	NOSIP	Q9Y314	301 aa	Known RBP	18.43	■□□□□ 0.54
CD44-222	ENST00000526025	PTPN13	Q12923	2485 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	FAM90A27P	A6NNH2	459 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025		A8MXE2	369 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	TNFRSF11B	O00300	401 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	OR6A2	O95222	327 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	CST1	P01037	141 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	ZNF43	P17038	809 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	CBL	P22681	906 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	UQCRC1	P31930	480 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	OMP	P47874	163 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	OR3A2	P47893	321 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	LSM11	P83369	360 aa	Known RBP eCLIP	18.42	■□□□□ 0.54
CD44-222	ENST00000526025	TFF3	Q07654	80 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	FOXD4	Q12950	439 aa	Predicted RBP	18.42	■□□□□ 0.54
CD44-222	ENST00000526025	CREB3L2	Q70SY1	520 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	NUFIP2	Q7Z417	695 aa	Known RBP	18.42	■□□□□ 0.54
CD44-222	ENST00000526025	STK32C	Q86UX6	486 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	EPHX4	Q8IUS5	362 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	LRRC17	Q8N6Y2	441 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	ZIC4	Q8N9L1	334 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	TAS2R5	Q9NYW4	299 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	DNAJB9	Q9UBS3	223 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	RCE1	Q9Y256	329 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	HIF3A	Q9Y2N7	669 aa		18.42	■□□□□ 0.54
CD44-222	ENST00000526025	EFCAB9	A8MZ26	197 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	EEF1E1-BLOC1S5	C9J1V9	151 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	EEF1E1	O43324	174 aa	Known RBP	18.41	■□□□□ 0.54
CD44-222	ENST00000526025	KLF4	O43474	513 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	AKAP8	O43823	692 aa	Known RBP	18.41	■□□□□ 0.54
CD44-222	ENST00000526025	ADORA3	P0DMS8	318 aa		18.41	■□□□□ 0.54
CD44-222	ENST00000526025	FCGR1A	P12314	374 aa		18.41	■□□□□ 0.54

Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms