RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 DCNP07585 359 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 EDNRAP25101 427 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HTR5AP47898 357 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HTRA4P83105 476 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 FOXK2Q01167 660 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 DMRTC1Q5HYR2 192 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 KHDRBS2Q5VWX1 349 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF772Q68DY9 489 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 LBX2Q6XYB7 198 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 THSD4Q6ZMP0 1018 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 GLB1L2Q8IW92 636 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SPICQ8N5J4 248 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PHYHIPQ92561 330 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HSPA12BQ96MM6 686 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 WFIKKN1Q96NZ8 548 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SULT4A1Q9BR01 284 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 NDC1Q9BTX1 674 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PRDM13Q9H4Q3 707 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 GAREM1Q9H706 876 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 BRD9Q9H8M2 597 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ELP3Q9H9T3 547 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HMX1Q9NP08 348 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 GTF2A1LQ9UNN4 478 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 DMRT1Q9Y5R6 373 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 FRYQ5TBA9 3013 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 COL11A1P12107 1806 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 C7orf77A4D0Y5 90 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 NPIPB15A6NHN6 443 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 MSGN1A6NI15 193 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 RNASEK-C17orf49H0YIS7 233 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PIN1P1O15428 100 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PPIHO43447 177 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 CTNSO60931 367 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SOCS5O75159 536 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 NDUFB6O95139 128 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HCKP08631 526 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 IL9P15248 144 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HPGDP15428 266 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SPI1P17947 270 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ACRV1P26436 265 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 S100A2P29034 98 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 DDTP30046 118 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 CALCRP30988 508 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PRKAR1BP31321 381 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF84P51523 738 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 TAS2R60P59551 318 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SKP1P63208 163 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 DCDP81605 110 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 EFNB1P98172 346 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SLC22A6Q4U2R8 563 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 AWAT1Q58HT5 328 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF385CQ66K41 422 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HIST2H3AQ71DI3 136 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 TMPRSS12Q86WS5 348 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SHISA5Q8N114 240 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 SLC44A3Q8N4M1 653 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 FRMD1Q8N878 549 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 FAM71CQ8NEG0 241 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 CHST13Q8NET6 341 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZCCHC10Q8TBK6 192 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 APOBEC4Q8WW27 367 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNRF4Q8WWF5 429 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 FGF11Q92914 225 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 COL26A1Q96A83 441 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 RAB3CQ96E17 227 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 NRIP2Q9BQI9 281 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZCCHC2Q9C0B9 1178 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 CACYBPQ9HB71 228 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 MRPL17Q9NRX2 175 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 COMMD9Q9P000 198 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 MMACHCQ9Y4U1 282 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PUS1Q9Y606 427 aaKnown RBP eCLIP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 PIAS3Q9Y6X2 628 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 LAMA1P25391 3075 aa6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 HELZP42694 1942 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF726A6NNF4 738 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 HMSDA8MTL9 139 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 AP4M1O00189 453 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 RNASET2O00584 256 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 LDLRAD4O15165 306 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 CLDN11O75508 207 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 C1QL1O75973 258 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 IGSF6O95976 241 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 CHRM4P08173 479 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 SMIM10L2AP0DMW4 78 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 SMIM10L2BP0DMW5 78 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 TEAD1P28347 426 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 MNX1P50219 401 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 GPR143P51810 404 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF763Q0D2J5 394 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 TRA2AQ13595 282 aaKnown RBP eCLIP6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 NR0B2Q15466 257 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 BATFQ16520 125 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 PRAMEF17Q5VTA0 474 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 C3orf33Q6P1S2 294 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 SLC36A1Q7Z2H8 476 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 SLC35F3Q8IY50 421 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 LINC01465Q8N7H1 131 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 ZNF511Q8NB15 262 aa6.66□□□□□ -1.34
LIMCH1-207ENST00000508466 DMBX1Q8NFW5 382 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms