RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	CLDN17	P56750	224 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	SELPLG	Q14242	412 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	SWI5	Q1ZZU3	235 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	PHYHD1	Q5SRE7	291 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	GCNT6	Q5T4J0	391 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF544	Q6NX49	715 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	MFSD8	Q8NHS3	518 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF417	Q8TAU3	575 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	STK35	Q8TDR2	534 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	BCL2L2	Q92843	193 aa	Predicted RBP	10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	THOC1	Q96FV9	657 aa	Known RBP	10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	BOD1	Q96IK1	185 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	ATP6V1G3	Q96LB4	118 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	SORCS2	Q96PQ0	1159 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC38A2	Q96QD8	506 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF587	Q96SQ5	575 aa	Predicted RBP	10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	CPPED1	Q9BRF8	314 aa	Predicted RBP	10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	THUMPD1	Q9NXG2	353 aa	Known RBP	10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	IFT52	Q9Y366	437 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	NBEAL1	Q6ZS30	2694 aa		10.14	□□□□□ -0.79
VTI1A-208	ENST00000494728	TMEM247	A6NEH6	219 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ELOA3D	A6NLF2	546 aa	Predicted RBP	10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	LRRN3	E7EW58	273 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	VAMP5	O95183	116 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	CECR9	P0C854	216 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	HLA-DOB	P13765	273 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	GRPR	P30550	384 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	PRPS1	P60891	318 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	STX1B	P61266	288 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	CDK6	Q00534	326 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ROR2	Q01974	943 aa	Known RBP	10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	TGFBR3	Q03167	851 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZSWIM7	Q19AV6	140 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	TMEM249	Q2WGJ8	235 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ELOA3B	Q3SY89	546 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	AGK	Q53H12	422 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	C6orf52	Q5T4I8	152 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	DHRS4L2	Q6PKH6	230 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	KLHL24	Q6TFL4	600 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	DLEU7	Q6UYE1	221 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	TSPYL5	Q86VY4	417 aa	Predicted RBP	10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	PTOV1	Q86YD1	416 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	TMEM123	Q8N131	208 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	LSMEM1	Q8N8F7	131 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ELOA3	Q8NG57	546 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	LRRC8C	Q8TDW0	803 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	SLC35B4	Q969S0	331 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	FBXO17	Q96EF6	278 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ADAD1	Q96M93	576 aa	Known RBP	10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	CCDC28B	Q9BUN5	200 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	PIF1	Q9H611	641 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF385D	Q9H6B1	395 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	NOX3	Q9HBY0	568 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	YAE1D1	Q9NRH1	226 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	KLHL14	Q9P2G3	628 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	CRNN	Q9UBG3	495 aa	Predicted RBP	10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF232	Q9UNY5	417 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	RASD1	Q9Y272	281 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	GMEB1	Q9Y692	573 aa		10.13	□□□□□ -0.79
VTI1A-208	ENST00000494728	ARPC4-TTLL3	A0A0A6YYG9	625 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728		A0A0B4J2E0	115 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728		A0A1B0GX12	115 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	C5orf58	C9J3I9	102 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	KRT33A	O76009	404 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	TGDS	O95455	350 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGLV1-44	P01699	117 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	OPN1SW	P03999	348 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	APOBEC3A	P31941	199 aa	Predicted RBP	10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	NAAA	Q02083	359 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	SCARB2	Q14108	478 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	NPTX1	Q15818	432 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	ALG10B	Q5I7T1	473 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	FAM69A	Q5T7M9	428 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	REEP3	Q6NUK4	255 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	CLEC2A	Q6UVW9	174 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	NHLRC1	Q6VVB1	395 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	RETREG3	Q86VR2	466 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	ANKS4B	Q8N8V4	417 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	C10orf105	Q8TEF2	133 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	MOGAT1	Q96PD6	335 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	OR2M2	Q96R28	347 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	RHNO1	Q9BSD3	238 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	LINC00470	Q9BZP3	86 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	RAD21L1	Q9H4I0	556 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	FKRP	Q9H9S5	495 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	C12orf10	Q9HB07	376 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	CA10	Q9NS85	328 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	TMEM45A	Q9NWC5	275 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	RCE1	Q9Y256	329 aa		10.12	□□□□□ -0.79
VTI1A-208	ENST00000494728	TRAV36DV7	A0A075B6V5	113 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	MS4A18	H0YCH9	400 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728		M0R3H8	397 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	AIM2	O14862	343 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	TLX2	O43763	284 aa	Predicted RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	WNT11	O96014	354 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGKV3-15	P01624	115 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	BGLAP	P02818	100 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	THY1	P04216	161 aa		10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	IGFBP1	P08833	259 aa	Predicted RBP	10.11	□□□□□ -0.79
VTI1A-208	ENST00000494728	ZNF16	P17020	682 aa	Predicted RBP	10.11	□□□□□ -0.79

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