RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 SMSP52788 366 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 SIRPAP78324 504 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 C1DQ13901 141 aaKnown RBP12.98□□□□□ -0.33
BRCA1-223ENST00000494123 TAF11Q15544 211 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 AMIGO2Q86SJ2 522 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 TUSC5Q8IXB3 177 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 KDM8Q8N371 416 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 NAXEQ8NCW5 288 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 OR10G2Q8NGC3 310 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 OR9Q2Q8NGE9 314 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 LIPHQ8WWY8 451 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 SF3B5Q9BWJ5 86 aaKnown RBP12.98□□□□□ -0.33
BRCA1-223ENST00000494123 SEMA6AQ9H2E6 1030 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 GP6Q9HCN6 339 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 PDP1Q9P0J1 537 aaPredicted RBP12.98□□□□□ -0.33
BRCA1-223ENST00000494123 Q9UFV3 132 aa12.98□□□□□ -0.33
BRCA1-223ENST00000494123 ERRFI1Q9UJM3 462 aaPredicted RBP12.98□□□□□ -0.33
BRCA1-223ENST00000494123 HIVEP3Q5T1R4 2406 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 C11orf98E9PRG8 122 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 H3BNX3 289 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 PLPP3O14495 311 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 GPR171O14626 319 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 RNF13O43567 381 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 SS18L1O75177 396 aaPredicted RBP12.97□□□□□ -0.33
BRCA1-223ENST00000494123 CRHP06850 196 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 YES1P07947 543 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 ZNF43P17038 809 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 CTSSP25774 331 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 P2RY4P51582 365 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 SLC16A1P53985 500 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 ADORA2A-AS1P86434 159 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 PUDPQ08623 228 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 FOXF2Q12947 444 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 SLC17A1Q14916 467 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 PDK3Q15120 406 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 PGBD2Q6P3X8 592 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 FAM214BQ7L5A3 538 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 ZER1Q7Z7L7 766 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 AQP11Q8NBQ7 271 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 OR9K2Q8NGE7 335 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 OR13C2Q8NGS9 318 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 OR51A7Q8NH64 312 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 GNPDA2Q8TDQ7 276 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 CENPNQ96H22 339 aaPredicted RBP12.97□□□□□ -0.33
BRCA1-223ENST00000494123 OXGR1Q96P68 337 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 SFXN3Q9BWM7 321 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 NTN4Q9HB63 628 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 RNF6Q9Y252 685 aa12.97□□□□□ -0.33
BRCA1-223ENST00000494123 TRAV27A0A087WT01 109 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 A0A1W2PNV4 684 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 UNC119BA6NIH7 251 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ZNF716A6NP11 495 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ZNF724A8MTY0 619 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 CDC42EP2O14613 210 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 SERPINI2O75830 405 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 AGFG2O95081 481 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 POU2F1P14859 743 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ZNF23P17027 643 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 FPR3P25089 353 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 AGTR1P30556 359 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 OPRM1P35372 400 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 POU3F1Q03052 451 aaPredicted RBP12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ANKDD1AQ495B1 522 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 EEF1A1P5Q5VTE0 462 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 HMBOX1Q6NT76 420 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 C1orf94Q6P1W5 598 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 SHQ1Q6PI26 577 aaKnown RBP12.96□□□□□ -0.33
BRCA1-223ENST00000494123 TMEM179BQ7Z7N9 219 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 CCDC71Q8IV32 467 aaPredicted RBP12.96□□□□□ -0.33
BRCA1-223ENST00000494123 UEVLDQ8IX04 471 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 OR5K1Q8NHB7 308 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ASB5Q8WWX0 329 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 ZNF775Q96BV0 537 aaPredicted RBP12.96□□□□□ -0.33
BRCA1-223ENST00000494123 SDCCAG3Q96C92 435 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 PKP2Q99959 881 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 NDEL1Q9GZM8 345 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 BCO1Q9HAY6 547 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 MGAT4BQ9UQ53 548 aa12.96□□□□□ -0.33
BRCA1-223ENST00000494123 IGKV3D-15A0A087WSY6 115 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ARRDC5A6NEK1 342 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 G3V2T6 193 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 MS4A18H0YCH9 400 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 DVL2O14641 736 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 BAG2O95816 211 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 GASTP01350 101 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 BMP5P22003 454 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 CHRNB4P30926 498 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ELF3P78545 371 aaPredicted RBP12.95□□□□□ -0.34
BRCA1-223ENST00000494123 RPL18Q07020 188 aaKnown RBP12.95□□□□□ -0.34
BRCA1-223ENST00000494123 POU4F3Q15319 338 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 MS4A18Q3C1V0 323 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ZBED5Q49AG3 693 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ZNF770Q6IQ21 691 aaPredicted RBP12.95□□□□□ -0.34
BRCA1-223ENST00000494123 GALNT5Q7Z7M9 940 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 HIPK1Q86Z02 1210 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ICA1LQ8NDH6 482 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 ANKK1Q8NFD2 765 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 GTPBP3Q969Y2 492 aaKnown RBP12.95□□□□□ -0.34
BRCA1-223ENST00000494123 NRBF2Q96F24 287 aa12.95□□□□□ -0.34
BRCA1-223ENST00000494123 TNFRSF13CQ96RJ3 184 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms