RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 MEIOCA2RUB1 952 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 HCN1O60741 890 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 TMCC2O75069 709 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 HMGN1P05114 100 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 SDHBP21912 280 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 APEX1P27695 318 aaKnown RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 FOLR3P41439 243 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 CCR4P51679 360 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 MLLT11Q13015 90 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 TGIF1Q15583 401 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 PYDC2Q56P42 97 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 RNLSQ5VYX0 342 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 RPL13AP3Q6NVV1 102 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 PAMR1Q6UXH9 720 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 TMPRSS12Q86WS5 348 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 PROKR2Q8NFJ6 384 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 UBASH3BQ8TF42 649 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 SLC25A46Q96AG3 418 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 SGTBQ96EQ0 304 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 TNFRSF13CQ96RJ3 184 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 CCNL2Q96S94 520 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 SMAD5Q99717 465 aaKnown RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 RANGRFQ9HD47 186 aaPredicted RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 HINT3Q9NQE9 182 aaKnown RBP11.05□□□□□ -0.64
HDAC6-230ENST00000488543 NPFFR2Q9Y5X5 522 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 CPAMD8Q8IZJ3 1885 aa11.05□□□□□ -0.64
HDAC6-230ENST00000488543 LOC102723996A0A087X1L8 192 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 IGHV1-45A0A0A0MS14 117 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 LOC101059948A0A1B0GTJ6 334 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 SHISA3A0PJX4 238 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 PRSS47A8MTI9 375 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 LRRN3E7EW58 273 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 PPM1BO75688 479 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 ENDOUP21128 410 aaKnown RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OTX2P32243 289 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 EVI2BP34910 448 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 MRPS15P82914 257 aaKnown RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 CD83Q01151 205 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 C1DQ13901 141 aaKnown RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 P2RY14Q15391 338 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 BTBD16Q32M84 506 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 RAB43Q86YS6 212 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 ATP6V1C2Q8NEY4 427 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OR11G2Q8NGC1 345 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OR52L1Q8NGH7 329 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OR5M3Q8NGP4 307 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OR51A7Q8NH64 312 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 HGDQ93099 445 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 HDHD5Q9BXW7 423 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 FABP12A6NFH5 140 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 FAM183AA6NL82 134 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 SOCS6O14544 535 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 NDUFB5O43674 189 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 EIF4E2O60573 245 aaKnown RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 COX6A1P12074 109 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 SLC6A8P48029 635 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 GLYR1Q49A26 553 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 ZFP69Q49AA0 526 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 ZNF544Q6NX49 715 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OAFQ86UD1 273 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 LRRC17Q8N6Y2 441 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 OR8K3Q8NH51 312 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 TMCO6Q96DC7 493 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 KATNB1Q9BVA0 655 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 TBL1XR1Q9BZK7 514 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 ADAM19Q9H013 955 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 FGF20Q9NP95 211 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 C19orf25Q9UFG5 118 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 IL17BQ9UHF5 180 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 DIMT1Q9UNQ2 313 aaKnown RBP11.04□□□□□ -0.64
HDAC6-230ENST00000488543 TRAPPC4Q9Y296 219 aa11.04□□□□□ -0.64
HDAC6-230ENST00000488543 DCDC2BA2VCK2 349 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CD8B2A6NJW9 211 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 FAM47E-STBD1D6RA91 191 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 HCRTR2O43614 444 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SCO2O43819 266 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 HPGDSO60760 199 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 WISP1O95388 367 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CD8BP10966 210 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 PNMTP11086 282 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 NAT2P11245 290 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 BMP7P18075 431 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 DLSTP36957 453 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 FBXW4P57775 412 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 TOMM34Q15785 309 aaPredicted RBP11.03□□□□□ -0.64
HDAC6-230ENST00000488543 FCRLBQ6BAA4 426 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 LYPD8Q6UX82 237 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 RNF138Q8WVD3 245 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 IMMP1LQ96LU5 166 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 TMEM43Q9BTV4 400 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 IFT27Q9BW83 186 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 TEX12Q9BXU0 123 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 SLC19A3Q9BZV2 496 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 CNTRLQ7Z7A1 2325 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 A0A1B0GVC2 190 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 A6NIN4 97 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 ELOA3DA6NLF2 546 aaPredicted RBP11.03□□□□□ -0.64
HDAC6-230ENST00000488543 GFRA3O60609 400 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 OR7A10O76100 309 aa11.03□□□□□ -0.64
HDAC6-230ENST00000488543 PPP1R3DO95685 299 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms