RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 FAM25CB3EWG5 89 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 FAM25GB3EWG6 89 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 LRRN3E7EW58 273 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 BCAT2O15382 392 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-212ENST00000477970 BGLAPP02818 100 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 PITPNBP48739 271 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 EFNA3P52797 238 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 DLX5P56178 289 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ERVK-25P63136 954 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ZNF117Q03924 483 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 YIF1BQ5BJH7 314 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ATAD3CQ5T2N8 411 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 C5orf46Q6UWT4 87 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 OR6S1Q8NH40 331 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ZNRF4Q8WWF5 429 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 TRIM63Q969Q1 353 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 MARVELD1Q9BSK0 173 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ALG12Q9BV10 488 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 MRI1Q9BV20 369 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 OR2B2Q9GZK3 357 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 OR8D2Q9GZM6 311 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 LRRN3Q9H3W5 708 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 COPS3Q9UNS2 423 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 SRPK3Q9UPE1 567 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 RASD1Q9Y272 281 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 HEATR5AQ86XA9 2040 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 PCDH15Q96QU1 1955 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 GNB5O14775 395 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 CTDSPLO15194 276 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ICOSLGO75144 302 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 SLC43A1O75387 559 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 KRT8P05787 483 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ANKRD34CP0C6C1 535 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 IL12BP29460 328 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 AQP2P41181 271 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 CDKN2AP42771 156 aaKnown RBP11.11□□□□□ -0.63
PTPRF-212ENST00000477970 CENPAP49450 140 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 LTBQ06643 244 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 BCL2A1Q16548 175 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 LEG1Q6P5S2 330 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 RPTNQ6XPR3 784 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 SLC25A45Q8N413 288 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 NLGN4YQ8NFZ3 816 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-212ENST00000477970 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-212ENST00000477970 RNF166Q96A37 237 aaPredicted RBP11.11□□□□□ -0.63
PTPRF-212ENST00000477970 RASD2Q96D21 266 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 FAM122AQ96E09 287 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 MOGAT1Q96PD6 335 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 RXFP3Q9NSD7 469 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 COPS7AQ9UBW8 275 aa11.11□□□□□ -0.63
PTPRF-212ENST00000477970 TRAV36DV7A0A075B6V5 113 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ZNF879B4DU55 563 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 RGS13O14921 159 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 IGHMP01871 453 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 EIF4EP06730 217 aaKnown RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 FOLR1P15328 257 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ACVR1BP36896 505 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 CSNK1EP49674 416 aaKnown RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 RSBN1Q5VWQ0 802 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TIGD3Q6B0B8 471 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SLC29A4Q7RTT9 530 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 CDC20BQ86Y33 519 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 MISPQ8IVT2 679 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ZPLD1Q8TCW7 415 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ATOH1Q92858 354 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ZNF486Q96H40 463 aaPredicted RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 LPAR4Q99677 370 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 NEK6Q9HC98 313 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 CPAMD8Q8IZJ3 1885 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 PHYHO14832 338 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 FLRT2O43155 660 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SELENOFO60613 162 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SDC3O75056 442 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 ONECUT2O95948 504 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TACSTD2P09758 323 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 EPXP11678 715 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 PGCP20142 388 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TACR3P29371 465 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SNAP47Q5SQN1 464 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 HLA-DQA1Q5Y7H0 255 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 PLET1Q6UQ28 207 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TIGD4Q8IY51 512 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 LSM14AQ8ND56 463 aaKnown RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 OR4M1Q8NGD0 313 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TRMT10AQ8TBZ6 339 aaKnown RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SLC7A6Q92536 515 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 CREB3L1Q96BA8 519 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 SEMA4CQ9C0C4 833 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 MMP28Q9H239 520 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 KLHL1Q9NR64 748 aa11.1□□□□□ -0.63
PTPRF-212ENST00000477970 PPIEQ9UNP9 301 aaKnown RBP11.1□□□□□ -0.63
PTPRF-212ENST00000477970 TRBV2A0A0J9YWF9 115 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 PDCD5O14737 125 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 FADS1O60427 444 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 BCKDHBP21953 392 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 ALAS2P22557 587 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 CTXN1P60606 82 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 BTG1P62324 171 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 PITPNAQ00169 270 aa11.09□□□□□ -0.63
PTPRF-212ENST00000477970 EGR3Q06889 387 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms