RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TESQ9UGI8 421 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 TRIM33Q9UPN9 1127 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 ANGPT4Q9Y264 503 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 NDUFAF1Q9Y375 327 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 GMEB1Q9Y692 573 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 ATP23Q9Y6H3 246 aa13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 CHD3Q12873 2000 aaKnown RBP13.76□□□□□ -0.21
CCDC88B-205ENST00000472524 YLPM1P49750 1951 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 PRORSD1PA6NEY8 169 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 M0R082 166 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ANGPT2O15123 496 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 EDF1O60869 148 aaKnown RBP13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 UPK3AO75631 287 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 WNT11O96014 354 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF43P17038 809 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 TTKP33981 857 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 FABP6P51161 128 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 CLDN17P56750 224 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 MTPNP58546 118 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 PRPS1P60891 318 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 DMTNQ08495 405 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 SELPLGQ14242 412 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ADRM1Q16186 407 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 CYP51A1Q16850 503 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 RUNDC3AQ59EK9 446 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ARMC8Q8IUR7 673 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 SMYD1Q8NB12 490 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 OR1K1Q8NGR3 316 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF417Q8TAU3 575 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 DNAJA4Q8WW22 397 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 STON2Q8WXE9 905 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 TAAR8Q969N4 342 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF587Q96SQ5 575 aaPredicted RBP13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ZNF385DQ9H6B1 395 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 CBLN4Q9NTU7 201 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 B3GALT5Q9Y2C3 310 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ATRQ13535 2644 aa13.75□□□□□ -0.21
CCDC88B-205ENST00000472524 ANK3Q12955 4377 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 COL6A5A8TX70 2615 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 IGKV1D-42A0A075B6H8 117 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A0G2JND7 137 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 AIM2O14862 343 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 SERPINB7O75635 380 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 SASH3O75995 380 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 GRPRP30550 384 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 C1DQ13901 141 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 NFYCQ13952 458 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 OR1Q1Q15612 314 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 TBRG1Q3YBR2 411 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 FAM69AQ5T7M9 428 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 C11orf71Q6IPW1 123 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 ULK3Q6PHR2 472 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 C5orf46Q6UWT4 87 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 LINGO2Q7L985 606 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 RETREG3Q86VR2 466 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 PTOV1Q86YD1 416 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 MUC15Q8N387 334 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 C11orf65Q8NCR3 313 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 SPATA3Q8NHX4 192 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 SLC47A1Q96FL8 570 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 ANKRD27Q96NW4 1050 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 CGREF1Q99674 301 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 WFDC6Q9BQY6 131 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 REPIN1Q9BWE0 567 aaKnown RBP13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 REG4Q9BYZ8 158 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 GRIP2Q9C0E4 1043 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 FKRPQ9H9S5 495 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 TMEM27Q9HBJ8 222 aa13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 BARX1Q9HBU1 254 aaPredicted RBP13.74□□□□□ -0.21
CCDC88B-205ENST00000472524 TRAV36DV7A0A075B6V5 113 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 OR6C65A6NJZ3 312 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 ATP6V1G2-DDX39BF2Z307 99 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 M0R3H8 397 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 OR2T1O43869 369 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 SSX4O60224 188 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 MFN2O95140 757 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 OPN1SWP03999 348 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 UBE2NP61088 152 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 TUBA1BP68363 451 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 TUBA4AP68366 448 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 ROR2Q01974 943 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 FAM91A1Q658Y4 838 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 HMBOX1Q6NT76 420 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 TUBA1AQ71U36 451 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 RANBP3LQ86VV4 465 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 DPP10Q8N608 796 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 BHLHE22Q8NFJ8 381 aaPredicted RBP13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 HTRA1Q92743 480 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 ADAD1Q96M93 576 aaKnown RBP13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 OXGR1Q96P68 337 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 KLHL14Q9P2G3 628 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 B3GAT1Q9P2W7 334 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 MOKQ9UQ07 419 aa13.73□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A087WUJ7 227 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A096LPE4 126 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A0B4J2E0 115 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A1B0GX12 115 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 A0A1W2PPZ6 126 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 TPST2O60704 377 aa13.72□□□□□ -0.21
CCDC88B-205ENST00000472524 SLC43A1O75387 559 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms