RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 PARD6BQ9BYG5 372 aa13.99□□□□□ -0.17
COL7A1-204ENST00000462475 THAP1Q9NVV9 213 aa13.99□□□□□ -0.17
COL7A1-204ENST00000462475 SEC14L4Q9UDX3 406 aa13.99□□□□□ -0.17
COL7A1-204ENST00000462475 KCNS2Q9ULS6 477 aa13.99□□□□□ -0.17
COL7A1-204ENST00000462475 OR6C65A6NJZ3 312 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 B9A039 149 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 IGLV1-44P01699 117 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 CELA3BP08861 270 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 NUDT7P0C024 238 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 APEHP13798 732 aaKnown RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 SRD5A1P18405 259 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 RPS5P46782 204 aaKnown RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 CLDN17P56750 224 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 ROR2Q01974 943 aaKnown RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 EGR4Q05215 589 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 SLC9B1Q4ZJI4 515 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 MFSD8Q8NHS3 518 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 MGARPQ8TDB4 240 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 KTI12Q96EK9 354 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 MAELQ96JY0 434 aaKnown RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF317Q96PQ6 595 aaPredicted RBP13.98□□□□□ -0.17
COL7A1-204ENST00000462475 LINC00470Q9BZP3 86 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 BPESC1Q9GZL8 116 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 PLK3Q9H4B4 646 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 ZIM2Q9NZV7 527 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 B3GAT1Q9P2W7 334 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 PRDM4Q9UKN5 801 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 MALRD1Q5VYJ5 2156 aa13.98□□□□□ -0.17
COL7A1-204ENST00000462475 A0A0G2JPF8 293 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 LOC390937A0A1W2PQ73 354 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 TMEM120BA0PK00 339 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF503-AS2A6NEH8 195 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 HNRNPCL2B2RXH8 293 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 HNRNPCL3B7ZW38 293 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 HNRNPCL1O60812 293 aaKnown RBP13.97□□□□□ -0.17
COL7A1-204ENST00000462475 PDE5AO76074 875 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF432O94892 652 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 IGKV3-15P01624 115 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 HNRNPCL4P0DMR1 293 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 SH3BGRP55822 239 aaPredicted RBP13.97□□□□□ -0.17
COL7A1-204ENST00000462475 HGFACQ04756 655 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 EFNB3Q15768 340 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ZSWIM7Q19AV6 140 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 C3orf36Q3SXR2 165 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 IQCCQ4KMZ1 466 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF311Q5JNZ3 666 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 C6orf10Q5SRN2 563 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 FAM120AOSQ5T036 256 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 MSANTD1Q6ZTZ1 278 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 MAL2Q969L2 176 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ITCHQ96J02 903 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 OR52B2Q96RD2 323 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 SOX7Q9BT81 388 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 RMND5AQ9H871 391 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 CACYBPQ9HB71 228 aaKnown RBP13.97□□□□□ -0.17
COL7A1-204ENST00000462475 MYOZ1Q9NP98 299 aaPredicted RBP13.97□□□□□ -0.17
COL7A1-204ENST00000462475 SDR39U1Q9NRG7 319 aaPredicted RBP13.97□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF232Q9UNY5 417 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 RCE1Q9Y256 329 aa13.97□□□□□ -0.17
COL7A1-204ENST00000462475 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.97□□□□□ -0.173e-7■□□□□ 9.2
COL7A1-204ENST00000462475 FZD7O75084 574 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 PAX7P23759 505 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 GTF2E2P29084 291 aaKnown RBP13.96□□□□□ -0.17
COL7A1-204ENST00000462475 PPOXP50336 477 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 IDH3GP51553 393 aaPredicted RBP13.96□□□□□ -0.17
COL7A1-204ENST00000462475 ARF1P84077 181 aaKnown RBP13.96□□□□□ -0.17
COL7A1-204ENST00000462475 FAM169BQ8N8A8 192 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 NUP37Q8NFH4 326 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 OR4F15Q8NGB8 312 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 ZNF837Q96EG3 531 aaPredicted RBP13.96□□□□□ -0.17
COL7A1-204ENST00000462475 C19orf24Q9BVV8 132 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 RSPO3Q9BXY4 272 aaPredicted RBP13.96□□□□□ -0.17
COL7A1-204ENST00000462475 ARMC7Q9H6L4 198 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 IFT52Q9Y366 437 aa13.96□□□□□ -0.17
COL7A1-204ENST00000462475 NBEAL1Q6ZS30 2694 aa13.96□□□□□ -0.18
COL7A1-204ENST00000462475 LRP5LA4QPB2 252 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 TMEM247A6NEH6 219 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 SLCO1B7G3V0H7 640 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 RPL36A-HNRNPH2H7BZ11 118 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 M0R082 166 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 SEC14L2O76054 403 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 CBR1P16152 277 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 ZNF23P17027 643 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 ZNF43P17038 809 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 THBS2P35442 1172 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 THBS4P35443 961 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 POLR2JP52435 117 aaKnown RBP13.95□□□□□ -0.18
COL7A1-204ENST00000462475 RGNQ15493 299 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 CEACAM16Q2WEN9 425 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 SLC2A7Q6PXP3 512 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 C6orf89Q6UWU4 347 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 COMTD1Q86VU5 262 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 SVOPLQ8N434 492 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 ZNF417Q8TAU3 575 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 GTF2H4Q92759 462 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 ZNF587Q96SQ5 575 aaPredicted RBP13.95□□□□□ -0.18
COL7A1-204ENST00000462475 PAIP1Q9H074 479 aaKnown RBP13.95□□□□□ -0.18
COL7A1-204ENST00000462475 ZNF442Q9H7R0 627 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 GPR35Q9HC97 309 aa13.95□□□□□ -0.18
COL7A1-204ENST00000462475 MOV10Q9HCE1 1003 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms