RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 ZNF611Q8N823 705 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 OR5W2Q8NH69 310 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ZFP90Q8TF47 636 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ABHD3Q8WU67 409 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 PERPQ96FX8 193 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 OR7D2Q96RA2 312 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 SDF2Q99470 211 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TMEM204Q9BSN7 226 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 SRXN1Q9BYN0 137 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 TINAGL1Q9GZM7 467 aaPredicted RBP6.42□□□□□ -1.38
USP54-208ENST00000461520 NMUR2Q9GZQ4 415 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 CXorf56Q9H5V9 222 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 COQ10BQ9H8M1 238 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ZNF701Q9NV72 531 aaPredicted RBP6.42□□□□□ -1.38
USP54-208ENST00000461520 ASIC5Q9NY37 505 aa6.42□□□□□ -1.38
USP54-208ENST00000461520 ARID1AO14497 2285 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 SERINC4A6NH21 518 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 H7C1Q1 480 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 M0QYG6 137 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 HS3ST1O14792 307 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 SNUPNO95149 360 aaKnown RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 LY6G6DO95868 133 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 AGR2O95994 175 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 PLAUP00749 431 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 GUSBP08236 651 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 CREB1P16220 341 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 IL32P24001 234 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 SLC7A1P30825 629 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 SOAT1P35610 550 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 MAP2K6P52564 334 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ITGADQ13349 1161 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 P2RY6Q15077 328 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 QPRTQ15274 297 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 TOMM34Q15785 309 aaPredicted RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 ZNF141Q15928 474 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ARHGAP11BQ3KRB8 267 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 PDZK1Q5T2W1 519 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 AP1ARQ63HQ0 302 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 C3orf33Q6P1S2 294 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 NUFIP2Q7Z417 695 aaKnown RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 C6orf120Q7Z4R8 191 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 NUDCD3Q8IVD9 361 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 LRRC34Q8IZ02 419 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 KIRREL3Q8IZU9 778 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 CIARTQ8N365 385 aaPredicted RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 TMCO5AQ8N6Q1 288 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ZNF614Q8N883 585 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 VPS37AQ8NEZ2 397 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 OR8J2Q8NGG1 315 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 OR5D16Q8NGK9 328 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 OR5AK3PQ8NH89 298 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 MIPOL1Q8TD10 442 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 AENQ8WTP8 325 aaKnown RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 OIT3Q8WWZ8 545 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 TMEM234Q8WY98 164 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ST8SIA1Q92185 356 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 HSD17B8Q92506 261 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 S100PBPQ96BU1 408 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 PSD2Q9BQI7 771 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 TMEM109Q9BVC6 243 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ALG8Q9BVK2 526 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ZNF350Q9GZX5 532 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 LAT2Q9GZY6 243 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ESRP2Q9H6T0 727 aaKnown RBP6.41□□□□□ -1.38
USP54-208ENST00000461520 NGBQ9NPG2 151 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 EXD2Q9NVH0 621 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 KLHL9Q9P2J3 617 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 PCDHGB4Q9UN71 923 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 PCNX3Q9H6A9 2034 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 ATRQ13535 2644 aa6.41□□□□□ -1.38
USP54-208ENST00000461520 HIVEP2P31629 2446 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 STAB1Q9NY15 2570 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 RNF103-CHMP3A0A140T963 221 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 PRSS51A0A1B0GVH4 220 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 TRIM64A6NGJ6 449 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 TRIM64BA6NI03 449 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ZNF724A8MTY0 619 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 TM9SF1O15321 606 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 BIRC5O15392 142 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 FCMRO60667 390 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 CYTIPO60759 359 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SCN2BO60939 215 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 UGT2B17O75795 530 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ADAP00813 363 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 CSTAP01040 98 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SERPINE1P05121 402 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 PGCP20142 388 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 FKBP2P26885 142 aaKnown RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 CCR4P51679 360 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 ABCE1P61221 599 aaKnown RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 RPS4XP62701 263 aaKnown RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 CSNK2A1P68400 391 aaPredicted RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 RASGEF1BQ0VAM2 473 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 SKP2Q13309 424 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 GPR68Q15743 365 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 TAB1Q15750 504 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 PDCD2Q16342 344 aaPredicted RBP6.4□□□□□ -1.38
USP54-208ENST00000461520 PGS1Q32NB8 556 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 NDUFAF6Q330K2 333 aa6.4□□□□□ -1.38
USP54-208ENST00000461520 NCMAPQ5T1S8 102 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms