RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 SIDT1Q9NXL6 827 aaKnown RBP4.91□□□□□ -1.62
VPS41-209ENST00000457055 TAS2R14Q9NYV8 317 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 ABI3Q9P2A4 366 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 KLQ9UEF7 1012 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 EPHA6Q9UF33 1036 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 GNPTGQ9UJJ9 305 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 RNF150Q9ULK6 438 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 B9D1Q9UPM9 204 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 SLC7A11Q9UPY5 501 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 ATRNL1Q5VV63 1379 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 CEMIPQ8WUJ3 1361 aa4.91□□□□□ -1.62
VPS41-209ENST00000457055 LAMA3Q16787 3333 aa4.9□□□□□ -1.62
VPS41-209ENST00000457055 SMG6Q86US8 1419 aaKnown RBP4.9□□□□□ -1.62
VPS41-209ENST00000457055 TAF1P21675 1872 aa4.9□□□□□ -1.62
VPS41-209ENST00000457055 CPED1A4D0V7 1026 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 MBD3L5A6NJ08 208 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 CCT8L1PA6NM43 557 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 H3BQF6 201 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 KCNK1O00180 336 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 KPNA4O00629 521 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 SDHDO14521 159 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 NBR2O15453 112 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ZNF749O43361 778 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 TGOLN2O43493 480 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 LDB2O43679 373 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR1F1O43749 312 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SYNGR3O43761 229 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 LRP3O75074 770 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SUPT7LO94864 414 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CCNE2O96020 404 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 MT-CYBP00156 380 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 GASTP01350 101 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CD1AP06126 327 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 VPREB1P12018 145 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CPN1P15169 458 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SPI1P17947 270 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 PMCHP20382 165 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 RBM34P42696 430 aaKnown RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 CHN2P52757 468 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CRYBA4P53673 196 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CD81P60033 236 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SNAP25P60880 206 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 RAP2BP61225 183 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SRSF1Q07955 248 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS41-209ENST00000457055 HSPB3Q12988 150 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 DNASE1L3Q13609 305 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 PKP1Q13835 747 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CRMP1Q14194 572 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 GK2Q14410 553 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 ZNF169Q14929 603 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 PGGHGQ32M88 737 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ACSM3Q53FZ2 586 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 AGKQ53H12 422 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 FGD3Q5JSP0 725 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 RBM48Q5RL73 367 aaKnown RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 DCAF12L2Q5VW00 463 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SYPL2Q5VXT5 272 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 LYSMD4Q5XG99 296 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 METRNLQ641Q3 311 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR8G2PQ6IF36 304 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 MED27Q6P2C8 311 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ACSM6Q6P461 480 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 FAM131AQ6UXB0 335 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 IL17RELQ6ZVW7 336 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CREB3L2Q70SY1 520 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 AHSA2Q719I0 299 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ABHD13Q7L211 337 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 COMMD2Q86X83 199 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ZNF595Q8IYB9 648 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CPXM2Q8N436 756 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 CLDN22Q8N7P3 220 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 BOLLQ8N9W6 283 aaKnown RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 CHDHQ8NE62 594 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 FAM46DQ8NEK8 389 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 B3GNT7Q8NFL0 401 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR2M7Q8NG81 312 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR8J3Q8NGG0 315 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR2T11Q8NH01 316 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 OR4K15Q8NH41 348 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 MAFAQ8NHW3 353 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 LGALS14Q8TCE9 139 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SPRYD4Q8WW59 207 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 MCHR2Q969V1 340 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 SH3YL1Q96HL8 342 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 TMEM56Q96MV1 263 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 BIRC8Q96P09 236 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 TNFRSF13CQ96RJ3 184 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ECSITQ9BQ95 431 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 THAP7Q9BT49 309 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 H2AFJQ9BTM1 129 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 DPH7Q9BTV6 452 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ALG8Q9BVK2 526 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 ING2Q9H160 280 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 PPIL3Q9H2H8 161 aaKnown RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 KCNK15Q9H427 330 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 TMEM38AQ9H6F2 299 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 NMNAT1Q9HAN9 279 aaPredicted RBP4.9□□□□□ -1.63
VPS41-209ENST00000457055 PLEKHA1Q9HB21 404 aa4.9□□□□□ -1.63
VPS41-209ENST00000457055 XPNPEP3Q9NQH7 507 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms