RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 IGHG3P01860 377 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 CDH2P19022 906 aaPredicted RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 UQCRC1P31930 480 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 IFNGR2P38484 337 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 CAPGP40121 348 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 OR2B6P58173 313 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 RPL18Q07020 188 aaKnown RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 COX10Q12887 443 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 GINS1Q14691 196 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 VASNQ6EMK4 673 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 KRT80Q6KB66 452 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 NHLRC1Q6VVB1 395 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 TMPPEQ6ZT21 453 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 USP51Q70EK9 711 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 CISD2Q8N5K1 135 aaKnown RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 FAM98AQ8NCA5 519 aaKnown RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 FANK1Q8TC84 345 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 ABTB1Q969K4 478 aaPredicted RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 PNPLA2Q96AD5 504 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 MIB2Q96AX9 1013 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 KLHL15Q96M94 604 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 TIMP4Q99727 224 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 TSSK6Q9BXA6 273 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 ADNPQ9H2P0 1102 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 LDAHQ9H6V9 325 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 FKRPQ9H9S5 495 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 PLA2G2EQ9NZK7 142 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 NDRG4Q9ULP0 352 aaKnown RBP9.84□□□□□ -0.83
SCN9A-205ENST00000454569 ADAM18Q9Y3Q7 739 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 CDH10Q9Y6N8 788 aa9.84□□□□□ -0.83
SCN9A-205ENST00000454569 KALRNO60229 2985 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SPTA1P02549 2419 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 EPG5Q9HCE0 2579 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 A0A1B0GTH9 108 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 H0YAE9 185 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ACOT7O00154 380 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SULT2B1O00204 365 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 PLPP3O14495 311 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 BHLHE40O14503 412 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 FZD7O75084 574 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 PPP1R3DO95685 299 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF708P17019 499 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 POU3F2P20265 443 aaPredicted RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 GSTM3P21266 225 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ENPP1P22413 925 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 GIPRP48546 466 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SLC9A3P48764 834 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ESRRGP62508 458 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF362Q5T0B9 420 aaPredicted RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF324BQ6AW86 544 aaPredicted RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 LAIR2Q6ISS4 152 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SMARCD3Q6STE5 483 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 BCDIN3DQ7Z5W3 292 aaKnown RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 OR5J2Q8NH18 312 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SLC25A43Q8WUT9 341 aaPredicted RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 OSTF1Q92882 214 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 WDYHV1Q96HA8 205 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 HRASLS5Q96KN8 279 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 PITX2Q99697 317 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF226Q9NYT6 803 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 TUBD1Q9UJT1 453 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF229Q9UJW7 825 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 HIF3AQ9Y2N7 669 aa9.83□□□□□ -0.84
SCN9A-205ENST00000454569 SMG1Q96Q15 3661 aaKnown RBP9.83□□□□□ -0.84
SCN9A-205ENST00000454569 RP1L1Q8IWN7 2480 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 A0A1B0GVC2 190 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 MAGEA13PA6NCF6 341 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 OR2T1O43869 369 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 PMS2P2O95744 297 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 PLGP00747 810 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 ADORA3P0DMS8 318 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 MYF6P23409 242 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 GGT2P36268 569 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 CLK1P49759 484 aaKnown RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 MAP2K6P52564 334 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 ERVK-25P63136 954 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 H3F3AP84243 136 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 RELBQ01201 579 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.82□□□□□ -0.843e-7■■■■□ 21
SCN9A-205ENST00000454569 SLC35F1Q5T1Q4 408 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 SLX4IPQ5VYV7 408 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 C12orf73Q69YU5 71 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 UGT2A3Q6UWM9 527 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 MAMDC2Q7Z304 686 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 CLDN22Q8N7P3 220 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 OR6S1Q8NH40 331 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 OR10D3Q8NH80 312 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 OR2V1Q8NHB1 315 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 ROBO4Q8WZ75 1007 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 TXNDC15Q96J42 360 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 EXO5Q9H790 373 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 KRCC1Q9NPI7 259 aaPredicted RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 TBC1D23Q9NUY8 699 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 MRPL39Q9NYK5 338 aaKnown RBP9.82□□□□□ -0.84
SCN9A-205ENST00000454569 KLHL13Q9P2N7 655 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 B3GAT1Q9P2W7 334 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 TRAPPC4Q9Y296 219 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 HDGFL3Q9Y3E1 203 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 GMPPBQ9Y5P6 360 aa9.82□□□□□ -0.84
SCN9A-205ENST00000454569 SPIN1Q9Y657 262 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms