RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 GNRHR2Q96P88 292 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 FUZQ9BT04 418 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 SLC19A3Q9BZV2 496 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 COQ10BQ9H8M1 238 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 SERINC1Q9NRX5 453 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 KRT84Q9NSB2 600 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 USE1Q9NZ43 259 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 JKAMPQ9P055 326 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 ENOPH1Q9UHY7 261 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 FOXD3Q9UJU5 478 aaPredicted RBP10.88□□□□□ -0.67
PTPRF-208ENST00000437607 OSGIN1Q9UJX0 560 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 MGAT4BQ9UQ53 548 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 JMJD1CQ15652 2540 aa10.88□□□□□ -0.67
PTPRF-208ENST00000437607 TMED7-TICAM2A0A0A6YYA0 188 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 C7orf72A4D263 438 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MBD3L4A6NDZ8 208 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MBD3L3A6NE82 208 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MBD3L5A6NJ08 208 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 B4DXG7 233 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 ETV2O00321 342 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 TRAPPC6AO75865 159 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 IL2RAP01589 272 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 IFI30P13284 250 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 BMP7P18075 431 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 CCNA2P20248 432 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 FUT4P22083 530 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 HOXC12P31275 282 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 GCKP35557 465 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 APOBEC1P41238 236 aaKnown RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 RAD23AP54725 363 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PPP2R2BQ00005 443 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 SLC25A53Q5H9E4 307 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 NHSL2Q5HYW2 709 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PPP4R4Q6NUP7 873 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PGBD2Q6P3X8 592 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 C5orf46Q6UWT4 87 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 Q71RC1 249 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 NRMQ8IXM6 262 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 CDK20Q8IZL9 346 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 RNF113BQ8IZP6 322 aaKnown RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 OR14L1PQ8NHC6 308 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PFN4Q8NHR9 129 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MBD3L2Q8NHZ7 208 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MAGEE2Q8TD90 523 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 SLC25A43Q8WUT9 341 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PRSS27Q9BQR3 290 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PIGQQ9BRB3 760 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM43Q9BTV4 400 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF426Q9BUY5 554 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 ADAM19Q9H013 955 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 PAPOLBQ9NRJ5 636 aaKnown RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 SMPD3Q9NY59 655 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 CHRNA9Q9UGM1 479 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 CAMK2AQ9UQM7 478 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 POFUT2Q9Y2G5 429 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 TMED7Q9Y3B3 224 aa10.87□□□□□ -0.67
PTPRF-208ENST00000437607 MAGED1Q9Y5V3 778 aaPredicted RBP10.87□□□□□ -0.67
PTPRF-208ENST00000437607 FBN3Q75N90 2809 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 TUBAL3A6NHL2 446 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 CD8B2A6NJW9 211 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 AHSA1O95433 338 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 NTN1O95631 604 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 ALPLP05186 524 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 SAGP10523 405 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 PRKACGP22612 351 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 CBLP22681 906 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 ADH6P28332 368 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 GPR4P46093 362 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 AQP4P55087 323 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 SORDQ00796 357 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 LTBQ06643 244 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 WIPI1Q5MNZ9 446 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 FAHD1Q6P587 224 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 TBPL2Q6SJ96 375 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 PM20D2Q8IYS1 436 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 GTPBP8Q8N3Z3 284 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 C10orf53Q8N6V4 93 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 C9orf106Q8NAJ2 232 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 GNPDA2Q8TDQ7 276 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 GTPBP3Q969Y2 492 aaKnown RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 DDIT4LQ96D03 193 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 LRRC46Q96FV0 321 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 FAM46AQ96IP4 442 aaKnown RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 SFXN2Q96NB2 322 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 RDH12Q96NR8 316 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 TRIB1Q96RU8 372 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 FEVQ99581 238 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 ZNF184Q99676 751 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-208ENST00000437607 DGCR6LQ9BY27 220 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 OR2B2Q9GZK3 357 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 SMURF2Q9HAU4 748 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 EDARQ9UNE0 448 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 PRR14LQ5THK1 2151 aa10.86□□□□□ -0.67
PTPRF-208ENST00000437607 IGKV1D-42A0A075B6H8 117 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 TMEM72A0PK05 275 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 CLCA1A8K7I4 914 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 A8MVM7 634 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 SHISA8B8ZZ34 492 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 HRGP04196 525 aa10.85□□□□□ -0.67
PTPRF-208ENST00000437607 TFPIP10646 304 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms