RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SLC19A3Q9BZV2 496 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 SPIN1Q9Y657 262 aaPredicted RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 AP4B1Q9Y6B7 739 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 PHF3Q92576 2039 aaKnown RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 FAM183AA6NL82 134 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 IGHG3P01860 377 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 AGFG1P52594 562 aaKnown RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 POU3F1Q03052 451 aaPredicted RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 MAMDC2Q7Z304 686 aaPredicted RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 GCNT2Q8N0V5 402 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 OR5J2Q8NH18 312 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 CNBD2Q96M20 576 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 ZNF184Q99676 751 aaPredicted RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 GRIP2Q9C0E4 1043 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 FN3KQ9H479 309 aa12.02□□□□□ -0.49
PRPF39-202ENST00000424478 MRPS18CQ9Y3D5 142 aaKnown RBP12.02□□□□□ -0.49
PRPF39-202ENST00000424478 DIDO1Q9BTC0 2240 aaKnown RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 POLEQ07864 2286 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 ARRDC5A6NEK1 342 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 PLPP3O14495 311 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 EDNRAP25101 427 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 CTXN1P60606 82 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 RUNX1T1Q06455 604 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 LGALS3BPQ08380 585 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 ALG10Q5BKT4 473 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 EMC4Q5J8M3 183 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TMEM225Q6GV28 225 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 MFSD8Q8NHS3 518 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 SLC25A43Q8WUT9 341 aaPredicted RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 Q96M85 177 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 GPR137Q96N19 417 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 MUS81Q96NY9 551 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 FOXN4Q96NZ1 517 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 VCXQ9H320 206 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 MED20Q9H944 212 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 FKRPQ9H9S5 495 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TVP23BQ9NYZ1 205 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 ZNF346Q9UL40 294 aaKnown RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TMEM5Q9Y2B1 443 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 IER3IP1Q9Y5U9 82 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 EIF4E1BA6NMX2 242 aaKnown RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 CDK2AP1O14519 115 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 P2RY4P51582 365 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TDGF1P3P51864 188 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 CARD17Q5XLA6 110 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 B3GLCTQ6Y288 498 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 RASSF6Q6ZTQ3 369 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 ESPNLQ6ZVH7 1005 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 HTRA1Q92743 480 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TRIB1Q96RU8 372 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 PSD2Q9BQI7 771 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 ASPNQ9BXN1 380 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 POTEKPQ9BYX7 375 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 HHATLQ9HCP6 504 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 KRCC1Q9NPI7 259 aaPredicted RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 RYDENQ9NUL5 291 aaKnown RBP12.01□□□□□ -0.49
PRPF39-202ENST00000424478 QPCTLQ9NXS2 382 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 B3GAT1Q9P2W7 334 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 TINAGQ9UJW2 476 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 CDH10Q9Y6N8 788 aa12.01□□□□□ -0.49
PRPF39-202ENST00000424478 OR6A2O95222 327 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 UQCRC1P31930 480 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 NTF4P34130 210 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 GCKP35557 465 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 RAD23AP54725 363 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 RPS4XP62701 263 aaKnown RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 ZNF324BQ6AW86 544 aaPredicted RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 RPUSD3Q6P087 351 aaKnown RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 DHRSXQ8N5I4 330 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 OR4K13Q8NH42 304 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 FAM81AQ8TBF8 368 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 TEX47Q8TBZ9 253 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 ERMAPQ96PL5 475 aaPredicted RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 CHST11Q9NPF2 352 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 ZNF229Q9UJW7 825 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 HDGFL3Q9Y3E1 203 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 INTS1Q8N201 2190 aaKnown RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 MYO18BQ8IUG5 2567 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 LOC100130705A0A1B0GUX0 176 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 CLCA1A8K7I4 914 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 PYCARD-AS1I3L0S3 204 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 OR2T1O43869 369 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 IGHV3-9P01782 118 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 CRYABP02511 175 aaKnown RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 IFNGR1P15260 489 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 RFX4Q33E94 735 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 EEF1A1P5Q5VTE0 462 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 ARHGAP11AQ6P4F7 1023 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 RPTNQ6XPR3 784 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 H1FNTQ75WM6 255 aaPredicted RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 CD163Q86VB7 1156 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 DNAJC9Q8WXX5 260 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 ZNF385AQ96PM9 386 aaKnown RBP12□□□□□ -0.49
PRPF39-202ENST00000424478 RERGLQ9H628 205 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 IL20Q9NYY1 176 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 TEX13CA0A0J9YWL9 993 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 BCKDKO14874 412 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 HCN1O60741 890 aa12□□□□□ -0.49
PRPF39-202ENST00000424478 SMNDC1O75940 238 aaKnown RBP eCLIP12□□□□□ -0.496e-25■■■□□ 17.2
PRPF39-202ENST00000424478 GYPBP06028 91 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms