RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FHL1Q13642 323 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 GAS6Q14393 721 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ZIC1Q15915 447 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 C4orf46Q504U0 113 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 STAC2Q6ZMT1 411 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 CDK20Q8IZL9 346 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 C12orf45Q8N5I9 185 aaPredicted RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 LINC01555Q8NAE3 123 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR51L1Q8NGJ5 315 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 RNF166Q96A37 237 aaPredicted RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 MS4A6EQ96DS6 147 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ALX4Q9H161 411 aaPredicted RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 PRDM9Q9NQV7 894 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 TNFSF18Q9UNG2 199 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 NOSIPQ9Y314 301 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 MED31Q9Y3C7 131 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ZNF337Q9Y3M9 751 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 THSD7BQ9C0I4 1608 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 A0A087WV48 116 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 KANTRA0A1W2PQU2 76 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 DUXAA6NLW8 204 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 XRCC3O43542 346 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 EIF3GO75821 320 aaKnown RBP eCLIP9.8□□□□□ -0.84
USP54-204ENST00000422491 GPR1P46091 355 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 SNTB1Q13884 538 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 SMAD2Q15796 467 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 TCTN1Q2MV58 587 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ARHGAP11BQ3KRB8 267 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ARHGAP11AQ6P4F7 1023 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ABHD17CQ6PCB6 329 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 MAMSTRQ6ZN01 415 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 IGSF21Q96ID5 467 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 WSB2Q9NYS7 404 aaPredicted RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 TAS2R8Q9NYW2 309 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 SERTAD3Q9UJW9 196 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 RNF222A6NCQ9 220 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 FGF18O76093 207 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 OR2F2O95006 317 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 IFNGP01579 166 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 RPN2P04844 631 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 CSRP1P21291 193 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 ITGB8P26012 769 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 HSD17B2P37059 387 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 BCL6P41182 706 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 AKR1C2P52895 323 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 AKR1C1Q04828 323 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 OR2F1Q13607 317 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 AMZ1Q400G9 498 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 TCEAL8Q8IYN2 117 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 PCSK9Q8NBP7 692 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 OR7G2Q8NG99 324 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 OR52E2Q8NGJ4 325 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 C2CD4CQ8TF44 421 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ZNRF4Q8WWF5 429 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 WNT2BQ93097 391 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 TNFRSF13CQ96RJ3 184 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 TSPAN10Q9H1Z9 355 aaPredicted RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 SLC23A2Q9UGH3 650 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 CARHSP1Q9Y2V2 147 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 OR10H1Q9Y4A9 318 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 PRRC2BQ5JSZ5 2229 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 A0A1B0GTI1 187 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 MEX3AA1L020 520 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 OR5H14A6NHG9 310 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 ITGB2P05107 769 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 CRYBA1P05813 215 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 HIST1H1CP16403 213 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 SYN1P17600 705 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 RPS4Y1P22090 263 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 CERS1P27544 350 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 CSF2RBP32927 897 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 RAB33AQ14088 237 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 MRPL2Q5T653 305 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 GLT8D1Q68CQ7 371 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 PGAP1Q75T13 922 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 SPAG16Q8N0X2 631 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 BEST3Q8N1M1 668 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 OTUB2Q96DC9 234 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 NUS1Q96E22 293 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 SDF2Q99470 211 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 EXO5Q9H790 373 aa9.8□□□□□ -0.84
USP54-204ENST00000422491 USP36Q9P275 1121 aaKnown RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 GPN3Q9UHW5 284 aaPredicted RBP9.8□□□□□ -0.84
USP54-204ENST00000422491 TET1Q8NFU7 2136 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TBC1D3KA0A087X1G2 549 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TBC1D3BA6NDS4 549 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TBC1D3FA6NER0 549 aaPredicted RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 PRR32B1ATL7 298 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 H0YC42 278 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 MELTFP08582 738 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 AKAIN1P0CW23 69 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 METAP1P53582 386 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 GUCA2AQ02747 115 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 LTBQ06643 244 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SRSF4Q08170 494 aaKnown RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 DUSP5Q16690 384 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SWI5Q1ZZU3 235 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TBC1D3GQ6DHY5 549 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 LRRTM1Q86UE6 522 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms