RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 IDH3BO43837 385 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 FAM20BO75063 409 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SERPINI2O75830 405 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 ITGB2P05107 769 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 LYNP07948 512 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 CD14P08571 375 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 PAICSP22234 425 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 EEF1B2P24534 225 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SHC1P29353 583 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 FMO3P31513 532 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 CD97P48960 835 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 DIO1P49895 249 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SNRPGP62308 76 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 PMP22Q01453 160 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 PUDPQ08623 228 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC35F1Q5T1Q4 408 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 TMPPEQ6ZT21 453 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 JAZF1Q86VZ6 243 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 UBQLNLQ8IYU4 475 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 BPIFB6Q8NFQ5 453 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 RHOXF1Q8NHV9 184 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 TMEM163Q8TC26 289 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 MIB2Q96AX9 1013 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 OTULINQ96BN8 352 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 GPX7Q96SL4 187 aaPredicted RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 NAA11Q9BSU3 229 aaPredicted RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC6A15Q9H2J7 730 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF226Q9NYT6 803 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 B3GALT5Q9Y2C3 310 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 IER3IP1Q9Y5U9 82 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 A0A1W2PRG6 482 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 PLPP3O14495 311 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 TNFSF11O14788 317 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 PRKYO43930 277 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 EIF1BO60739 113 aaKnown RBP15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 AKR7A3O95154 331 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 F13BP05160 661 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 CELA3AP09093 270 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 ERVK-25P63136 954 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 CSNK2BP67870 215 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 FHL1Q13642 323 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 MEDAGQ5VYS4 303 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 ESPNLQ6ZVH7 1005 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 MEIOBQ8N635 442 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 UBE2FQ969M7 185 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 MFRPQ9BY79 579 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 TIGARQ9NQ88 270 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 H2AFY2Q9P0M6 372 aaPredicted RBP15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 GRHPRQ9UBQ7 328 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 LHX6Q9UPM6 363 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 TPRKBQ9Y3C4 175 aa15.39■□□□□ 0.05
CCDC28B-202ENST00000421922 KIAA1549Q9HCM3 1950 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 TRGV5A0A0B4J1U4 118 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 SH3D21A4FU49 640 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 SLC1A7O00341 560 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 APEHP13798 732 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 GFRA1P56159 465 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 KCTD21Q4G0X4 260 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 HBMQ6B0K9 141 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 GPR139Q6DWJ6 353 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 LSM14AQ8ND56 463 aaKnown RBP15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 ADPRHL1Q8NDY3 354 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 ANKK1Q8NFD2 765 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 OR2V1Q8NHB1 315 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 FBLIM1Q8WUP2 373 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 ABHD17AQ96GS6 310 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 LRR1Q96L50 414 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 ENKD1Q9H0I2 346 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 DEFB127Q9H1M4 99 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 ACKR4Q9NPB9 350 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 NRIP3Q9NQ35 241 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 CMC2Q9NRP2 79 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 DNAJC27Q9NZQ0 273 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 AASSQ9UDR5 926 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 SEC14L4Q9UDX3 406 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 SCOCQ9UIL1 159 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 GPR52Q9Y2T5 361 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 MED12Q93074 2177 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 NBEAQ8NFP9 2946 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 PTPRQQ9UMZ3 2332 aa15.38■□□□□ 0.05
CCDC28B-202ENST00000421922 PRR23D1E9PI22 279 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 NPIPA5E9PKD4 350 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 XKRYO14609 159 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 IMPA2O14732 288 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ARPC3O15145 178 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 DNPH1O43598 174 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ACTL6AO96019 429 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 PLGP00747 810 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 CCDC159P0C7I6 412 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 PRR23D2P0DMB1 279 aaPredicted RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 ACVR2AP27037 513 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 SDHAP31040 664 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 EIF1AXP47813 144 aaKnown RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 DAP3P51398 398 aaKnown RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 CXCR4P61073 352 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 RPS3AP61247 264 aaKnown RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 C1DQ13901 141 aaKnown RBP15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 INAQ16352 499 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 EMC4Q5J8M3 183 aa15.37■□□□□ 0.05
CCDC28B-202ENST00000421922 TMEM225Q6GV28 225 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms