RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 CCDC71Q8IV32 467 aaPredicted RBP7.63□□□□□ -1.19
USP54-203ENST00000418501 C15orf40Q8WUR7 153 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 HGDQ93099 445 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 INTS14Q96SY0 518 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 MCCC2Q9HCC0 563 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 NDUFB11Q9NX14 153 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 TEX13CA0A0J9YWL9 993 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 CENPVL1A0A0U1RR11 272 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 J3QLW9 94 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 SULT2B1O00204 365 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 CD46P15529 392 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 ZNF19P17023 458 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 PLGLB1Q02325 96 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 LHFPL3Q86UP9 236 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 TPRA1Q86W33 373 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 SDR9C7Q8NEX9 313 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 OR11G2Q8NGC1 345 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 OR8D4Q8NGM9 314 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 TM9SF4Q92544 642 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 PAQR5Q9NXK6 330 aaPredicted RBP7.63□□□□□ -1.19
USP54-203ENST00000418501 CKLFQ9UBR5 152 aa7.63□□□□□ -1.19
USP54-203ENST00000418501 RPH3AQ9Y2J0 694 aaPredicted RBP7.63□□□□□ -1.19
USP54-203ENST00000418501 TRDV1A0A1B0GX56 115 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 NPIPB13A6NJU9 1138 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 NPIPB4C9JG80 1138 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 NPIPA2E9PIF3 369 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 NPIPA3F8WFD2 350 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 M0R129 80 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 GATBO75879 557 aaKnown RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 CD2P06729 351 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 ZNF43P17038 809 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 EDNRAP25101 427 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 CAPZA1P52907 286 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 VBP1P61758 197 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 ZP4Q12836 540 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 OR7A5Q15622 319 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 NDUFAF6Q330K2 333 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TMPRSS9Q7Z410 1059 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 COMTD1Q86VU5 262 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MARCH9Q86YJ5 346 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TMEM41AQ96HV5 264 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MEPEQ9NQ76 525 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 C20orf141Q9NUB4 165 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 P4HTMQ9NXG6 502 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MED11Q9P086 117 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TRAPPC4Q9Y296 219 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 DNAH12Q6ZR08 3092 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 C11orf98E9PRG8 122 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 KLRC4-KLRK1H3BQV0 150 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 CDC42EP2O14613 210 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TIAF1O95411 115 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 IGHG1P01857 330 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 IGFBP1P08833 259 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 ZNF84P51523 738 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 INSM1Q01101 510 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 RPL18Q07020 188 aaKnown RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 RASGEF1BQ0VAM2 473 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 SF3B4Q15427 424 aaKnown RBP eCLIP7.62□□□□□ -1.19
USP54-203ENST00000418501 STPG1Q5TH74 334 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 LIPKQ5VXJ0 399 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 GATAD2BQ8WXI9 593 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 INTS12Q96CB8 462 aaKnown RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 ARHGAP9Q9BRR9 750 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MROQ9BYG7 248 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 AASSQ9UDR5 926 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 FBXL4Q9UKA2 621 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 KLF13Q9Y2Y9 288 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 CACNA1IQ9P0X4 2223 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 SEMA7AO75326 666 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 LYPD3O95274 346 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 SYNGR4O95473 234 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 IGHA1P01876 353 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 COX6A1P12074 109 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 CSRP1P21291 193 aaKnown RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 SOX3P41225 446 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 CHAF1BQ13112 559 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 ZNF322Q6U7Q0 402 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 GLRX5Q86SX6 157 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MCEMP1Q8IX19 187 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 YIPF7Q8N8F6 280 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 OR14L1PQ8NHC6 308 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 SPRYD4Q8WW59 207 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 PHF21AQ96BD5 680 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 IMMP1LQ96LU5 166 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 ANGPTL4Q9BY76 406 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 VDAC3Q9Y277 283 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 A0A075B6Q4 140 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 SLC19A2O60779 497 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TP53P04637 393 aaPredicted RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 CELP19835 753 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 GPR85P60893 370 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 RGS21Q2M5E4 152 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 CDCP2Q5VXM1 449 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 KRT77Q7Z794 578 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MEX3DQ86XN8 651 aaKnown RBP7.62□□□□□ -1.19
USP54-203ENST00000418501 KLBQ86Z14 1044 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 MEIOBQ8N635 442 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 TMEM178AQ8NBL3 297 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 OR5B2Q96R09 309 aa7.62□□□□□ -1.19
USP54-203ENST00000418501 WFDC6Q9BQY6 131 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms