RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 LIMS2Q7Z4I7 341 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 CPEB2Q7Z5Q1 589 aaKnown RBP15.95■□□□□ 0.14
PHRF1-202ENST00000413872 MYEOVQ96EZ4 313 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 ARRDC1-AS1Q9H2J1 176 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 POLE4Q9NR33 117 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 COQ3Q9NZJ6 369 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 UBQLN2Q9UHD9 624 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 A0A087WV62 115 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 TMEM72A0PK05 275 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 KNG1P01042 644 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 OR8G3PP0DMU2 310 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 ZFAND1Q8TCF1 268 aa15.95■□□□□ 0.14
PHRF1-202ENST00000413872 YARS2Q9Y2Z4 477 aaKnown RBP15.95■□□□□ 0.14
PHRF1-202ENST00000413872 HTR1FP30939 366 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 SLC1A3P43003 542 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 RBM39Q14498 530 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 KCNAB1Q14722 419 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 SMAD2Q15796 467 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 KIF18BQ86Y91 864 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 ITFG2Q969R8 447 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 UTP4Q969X6 686 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 APH1AQ96BI3 265 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 POMT2Q9UKY4 750 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 CACNG2Q9Y698 323 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 TIMM8AO60220 97 aaPredicted RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 C7orf34Q96L11 122 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 RASD1Q9Y272 281 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 TFPTP0C1Z6 253 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 UBCP0CG48 685 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 IL2RGP31785 369 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 GABREP78334 506 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 TRMT12Q53H54 448 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 ACTBL2Q562R1 376 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 CYHR1Q6ZMK1 362 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 OR56B1Q8NGI3 324 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 SDF2Q99470 211 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 DVL2O14641 736 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 P2RX6O15547 441 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 MT-CO2P00403 227 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 RGS19P49795 217 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 SEC61A1P61619 476 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 CA13Q8N1Q1 262 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 GJC3Q8NFK1 279 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 NRG4Q8WWG1 115 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 MYEF2Q9P2K5 600 aaKnown RBP15.94■□□□□ 0.14
PHRF1-202ENST00000413872 LAMB2P55268 1798 aa15.94■□□□□ 0.14
PHRF1-202ENST00000413872 C21orf33P30042 268 aaPredicted RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 HOXC8P31273 242 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TAS2R19P59542 299 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 HTR4Q13639 388 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 CRMP1Q14194 572 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 NDNFQ8TB73 568 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 ZNF845Q96IR2 970 aaPredicted RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 HYLS1Q96M11 299 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 FOXN4Q96NZ1 517 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 NMNAT3Q96T66 252 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 ZNF286AQ9HBT8 521 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 CHRNA9Q9UGM1 479 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 ECM29Q5VYK3 1845 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 OR6C65A6NJZ3 312 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 NOTOA8MTQ0 251 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 I3L521 148 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 LGI1O95970 557 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 CAPNS1P04632 268 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 HTR2AP28223 471 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 BDKRB2P30411 391 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 CX3CR1P49238 355 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 GRB2P62993 217 aaKnown RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 ETFBKMTQ8IXQ9 262 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TMEM255BQ8WV15 326 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TP53TG5Q9Y2B4 290 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TMEM221A6NGB7 291 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 FGF17O60258 216 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 SERPINA2P20848 420 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TAS2R46P59540 309 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 LTBQ06643 244 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 NPSR1Q6W5P4 371 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 DND1Q8IYX4 353 aaKnown RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 LILRB2Q8N423 598 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 PRR18Q8N4B5 295 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 OR6F1Q8NGZ6 308 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 ZNF582Q96NG8 517 aaPredicted RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 USB1Q9BQ65 265 aaKnown RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 NDUFAF4Q9P032 175 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 B3GAT1Q9P2W7 334 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 SLC23A2Q9UGH3 650 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 DIMT1Q9UNQ2 313 aaKnown RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 CCDC187A0A096LP49 1063 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 A0A0G2JMP0 313 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TSPAN11A1L157 253 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 GABRPO00591 440 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 GAPDHSO14556 408 aaPredicted RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 SLC34A2O95436 690 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 B3GALT4O96024 378 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 MTCP1P56278 107 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 EIF3IQ13347 325 aaKnown RBP15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TRA2AQ13595 282 aaKnown RBP eCLIP15.93■□□□□ 0.145e-8■□□□□ 10.4
PHRF1-202ENST00000413872 AGAP7PQ5VUJ5 663 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 TBPL2Q6SJ96 375 aa15.93■□□□□ 0.14
PHRF1-202ENST00000413872 MAML2Q8IZL2 1156 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms