RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MFSD8Q8NHS3 518 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ACOT11Q8WXI4 607 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 DDIT4LQ96D03 193 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 ARL5BQ96KC2 179 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 KLHL15Q96M94 604 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 EPYCQ99645 322 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 KCNJ16Q9NPI9 418 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 MEPEQ9NQ76 525 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 PAQR5Q9NXK6 330 aaPredicted RBP8.21□□□□□ -1.1
VPS53-203ENST00000401468 VNN3Q9NY84 501 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 CLCF1Q9UBD9 225 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 AP4S1Q9Y587 144 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 LYVE1Q9Y5Y7 322 aa8.21□□□□□ -1.1
VPS53-203ENST00000401468 TRAV36DV7A0A075B6V5 113 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 A0A087WUU8 490 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 SH3PXD2BA1X283 911 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 LIPT2A6NK58 231 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 ANKRD65E5RJM6 399 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 H0YC42 278 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 H3BML4 177 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 KLF4O43474 513 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 WDR1O75083 606 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 DIRAS1O95057 198 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 MT-ATP6P00846 226 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 BGLAPP02818 100 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 MT-ND1P03886 318 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 IMPDH2P12268 514 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 FCGR1AP12314 374 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 AGAP20933 346 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 BMP5P22003 454 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 RRM2P31350 389 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 UQCRC1P31930 480 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 IFNA8P32881 189 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 YAP1P46937 504 aaKnown RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 P2RY4P51582 365 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 UGT2B15P54855 530 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TPD52P55327 224 aaPredicted RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 RAC3P60763 192 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 PRKCDQ05655 676 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 SEC23BQ15437 767 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 OCLNQ16625 522 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 FAM69AQ5T7M9 428 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 WLSQ5T9L3 541 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 C1orf140Q5VVS0 124 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TMEM211Q6ICI0 200 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TMPPEQ6ZT21 453 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 MBOAT2Q6ZWT7 520 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 CDH24Q86UP0 819 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 RELL2Q8NC24 303 aaPredicted RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 ADPRHL1Q8NDY3 354 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 OR2V1Q8NHB1 315 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TMEM255BQ8WV15 326 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TMEM239Q8WW34 195 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 KTI12Q96EK9 354 aaPredicted RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 RSRC1Q96IZ7 334 aaKnown RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 TRIB1Q96RU8 372 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 FNDC11Q9BVV2 318 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 OR11A1Q9GZK7 315 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 ENKD1Q9H0I2 346 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 NTN4Q9HB63 628 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 FANCFQ9NPI8 374 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 SELENONQ9NZV5 590 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 RHCGQ9UBD6 479 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 DNAJB9Q9UBS3 223 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 AURKCQ9UQB9 309 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 FAM32AQ9Y421 112 aaKnown RBP8.2□□□□□ -1.1
VPS53-203ENST00000401468 ZNF175Q9Y473 711 aa8.2□□□□□ -1.1
VPS53-203ENST00000401468 TRBV4-1A0A0J9YWV2 114 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CD8B2A6NJW9 211 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CLOCKO15516 846 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 OR2T1O43869 369 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 GADD45GO95257 159 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CST1P01037 141 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 ASAH2BP0C7U1 165 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 GABRA1P14867 456 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 FASP25445 335 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 IDUAP35475 653 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 OMPP47874 163 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 DIO1P49895 249 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CSNK2A1P68400 391 aaPredicted RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 ELF3P78545 371 aaPredicted RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 LTBQ06643 244 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 FHL1Q13642 323 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 MFSD13AQ14CX5 517 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 GUSBP1Q15486 140 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 ZNF74Q16587 644 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 TMEM176BQ3YBM2 270 aaPredicted RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 ACSF3Q4G176 576 aaPredicted RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 ABLIM2Q6H8Q1 611 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 HMBOX1Q6NT76 420 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 C1orf94Q6P1W5 598 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 PODNL1Q6PEZ8 512 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 TTC33Q6PID6 262 aaPredicted RBP8.19□□□□□ -1.1
VPS53-203ENST00000401468 TMPRSS11FQ6ZWK6 438 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 SLC46A3Q7Z3Q1 461 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 LINC00471Q8N535 108 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 OR10D3Q8NH80 312 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 PYDC1Q8WXC3 89 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 TAAR8Q969N4 342 aa8.19□□□□□ -1.1
VPS53-203ENST00000401468 CPNE4Q96A23 557 aaPredicted RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms