RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 TACR3P29371 465 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 TRA2BP62995 288 aaKnown RBP13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 SCGB2A2Q13296 93 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 C18orf63Q68DL7 685 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 FAM198BQ6UWH4 519 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 FNDC9Q8TBE3 224 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 ACOT11Q8WXI4 607 aaPredicted RBP13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 SPIN2AQ99865 258 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 SPIN2BQ9BPZ2 258 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 ZPBPQ9BS86 351 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 PRMT8Q9NR22 394 aaPredicted RBP13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 A0A1B0GX78 115 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 CENPBD1B2RD01 187 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 PRSS36Q5K4E3 855 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 MALSU1Q96EH3 234 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 IP6K3Q96PC2 410 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 SLAMF8Q9P0V8 285 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 TRAPPC2LQ9UL33 140 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 HHLA2Q9UM44 414 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 V9GY05 133 aa13.19□□□□□ -0.3
PCDHA11-201ENST00000398640 PRAMEF27A3QJZ7 478 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 ANKRD33BA6NCL7 494 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 ZNF587BE7ETH6 402 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 CSF1P09603 554 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 MYF5P13349 255 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 CA5AP35218 305 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 PGFP49763 221 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 GNB2P62879 340 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 NFATC3Q12968 1075 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 HENMT1Q5T8I9 393 aaKnown RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 PRAMEF9Q5VWM5 478 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 NRG4Q8WWG1 115 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 MSI2Q96DH6 328 aaKnown RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 CCDC74BQ96LY2 380 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 BIRC8Q96P09 236 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 SLC29A1Q99808 456 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 NICN1Q9BSH3 213 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 TMEM202A6NGA9 273 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 ZNF593O00488 134 aaPredicted RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 PTGER4P35408 488 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 FXNQ16595 210 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 SPRED3Q2MJR0 410 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 COMMD7Q86VX2 200 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 DMBX1Q8NFW5 382 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 TUSC2O75896 110 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 EIF4EP06730 217 aaKnown RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 DYRK1AQ13627 763 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 KEAP1Q14145 624 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 SLC5A12Q1EHB4 618 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 SLC36A2Q495M3 483 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 CCDC28AQ8IWP9 274 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 THAP7Q9BT49 309 aaPredicted RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 CLMPQ9H6B4 373 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 EHFQ9NZC4 300 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 ATP23Q9Y6H3 246 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 DLL1O00548 723 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 NUDT7P0C024 238 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 RAD52P43351 418 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 EDDM3BP56851 147 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 IKZF1Q13422 519 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 TRIP6Q15654 476 aaKnown RBP13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 AGBL4Q5VU57 503 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 WDSUB1Q8N9V3 476 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 SIMC1Q8NDZ2 872 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 OR1J2Q8NGS2 313 aa13.18□□□□□ -0.3
PCDHA11-201ENST00000398640 PAHP00439 452 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 DPTQ07507 201 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 PGGHGQ32M88 737 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 MED25Q71SY5 747 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 MARCH3Q86UD3 253 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 TMEM163Q8TC26 289 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 SAT2Q96F10 170 aaPredicted RBP13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 SUCNR1Q9BXA5 334 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 NDUFAF4Q9P032 175 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 BTBD17A6NE02 478 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 NKX6-3A6NJ46 265 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 K7ESM1 405 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 RAB6AP20340 208 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 EPHA5P54756 1037 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 RPL23AP62750 156 aaKnown RBP13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 ZNF750Q32MQ0 723 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 YOD1Q5VVQ6 348 aaPredicted RBP13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 OR2T35Q8NGX2 323 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 NRSN2Q9GZP1 204 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 RASD1Q9Y272 281 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 GPR45Q9Y5Y3 372 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 CITO14578 2027 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 D6RAR5 112 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 HOXB5P09067 269 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 AGFG1P52594 562 aaKnown RBP13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 HTD2P86397 168 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 HNF4GQ14541 408 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 EXT1Q16394 746 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 OR5D18Q8NGL1 313 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 F8W036 122 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 TAS2R31P59538 309 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 RPL11P62913 178 aaKnown RBP13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 SLC35A1P78382 337 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 BLOC1S1P78537 153 aa13.17□□□□□ -0.3
PCDHA11-201ENST00000398640 IL13RA1P78552 427 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms