RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 GALNSP34059 522 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 DIO1P49895 249 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 RPS4XP62701 263 aaKnown RBP13.68□□□□□ -0.22
TPM3-208ENST00000341485 ERVK-25P63136 954 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 CDK5R1Q15078 307 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 CDONQ4KMG0 1287 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 VWA2Q5GFL6 755 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 MED25Q71SY5 747 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 PPP1R3BQ86XI6 285 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 ZNF440Q8IYI8 595 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 PRSS58Q8IYP2 241 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 SYS1Q8N2H4 156 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 MS4A15Q8N5U1 240 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 TEX19Q8NA77 164 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 MOSPD2Q8NHP6 518 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 UBASH3BQ8TF42 649 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 RASD2Q96D21 266 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 NMNAT2Q9BZQ4 307 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 NRIP3Q9NQ35 241 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 NLKQ9UBE8 527 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 COPS3Q9UNS2 423 aa13.68□□□□□ -0.22
TPM3-208ENST00000341485 A0A1B0GVC2 190 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 OR6C68A6NDL8 312 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 A6NIN4 97 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 ARPC3O15145 178 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 PAHP00439 452 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 TFPIP10646 304 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 SPI1P17947 270 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 NPR2P20594 1047 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 ACP1P24666 158 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 HLA-DMAP28067 261 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 GDI2P50395 445 aaKnown RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 TRA2AQ13595 282 aaKnown RBP eCLIP13.67□□□□□ -0.224e-13■■■■□ 25.8
TPM3-208ENST00000341485 DBX2Q6ZNG2 339 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 C7orf57Q8NEG2 295 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 OR14A16Q8NHC5 309 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 TRMT10AQ8TBZ6 339 aaKnown RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 PTPMT1Q8WUK0 201 aaPredicted RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 TSLPQ969D9 159 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 SNX18Q96RF0 628 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 WACQ9BTA9 647 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 RANGRFQ9HD47 186 aaPredicted RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 KLHL1Q9NR64 748 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 OCIAD1Q9NX40 245 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 MPDZO75970 2070 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 LAMA1P25391 3075 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 FAM240BA0A1B0GVZ2 78 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 A8MUA0 341 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 LANCL1O43813 399 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 SELENOFO60613 162 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 TIAF1O95411 115 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 GP1BAP07359 652 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 INPP1P49441 399 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 GBX2P52951 348 aaPredicted RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 CLDN20P56880 219 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 ACTA2P62736 377 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 ACTG2P63267 376 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 LGALS3BPQ08380 585 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 PON3Q15166 354 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 TATDN3Q17R31 274 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 ZNF57Q68EA5 555 aaPredicted RBP13.67□□□□□ -0.22
TPM3-208ENST00000341485 PWWP2BQ6NUJ5 590 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 LYPD4Q6UWN0 246 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 OR7G1Q8NGA0 311 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 THAP4Q8WY91 577 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 UPRTQ96BW1 309 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 SMIM19Q96E16 107 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 SLC19A3Q9BZV2 496 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 NCDNQ9UBB6 729 aa13.67□□□□□ -0.22
TPM3-208ENST00000341485 A0A1W2PPK0 400 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ELOA3DA6NLF2 546 aaPredicted RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 RGS13O14921 159 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 RAB3BP20337 219 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 RBMS1P29558 406 aaKnown RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 SLC37A1P57057 533 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 RPS11P62280 158 aaKnown RBP eCLIP13.66□□□□□ -0.22
TPM3-208ENST00000341485 SKP2Q13309 424 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ISXQ2M1V0 245 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ELOA3BQ3SY89 546 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 WBP2NLQ6ICG8 309 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 APOOLQ6UXV4 268 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ATG4DQ86TL0 474 aaPredicted RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 ELOA3Q8NG57 546 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 TRIM63Q969Q1 353 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ZNF524Q96C55 264 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 FYTTD1Q96QD9 318 aaKnown RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 GPX7Q96SL4 187 aaPredicted RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 HDHD2Q9H0R4 259 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 NXF5Q9H1B4 397 aaKnown RBP13.66□□□□□ -0.22
TPM3-208ENST00000341485 GNG8Q9UK08 70 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 MKL2Q9ULH7 1088 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 ALG5Q9Y673 324 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 NUP210LQ5VU65 1888 aa13.66□□□□□ -0.22
TPM3-208ENST00000341485 MUC3AQ02505 3323 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 TRAV1-2A0A0B4J238 106 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 C4orf47A7E2U8 309 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 CENPXA8MT69 81 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 IL33O95760 270 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 SERPINA3P01011 423 aa13.65□□□□□ -0.22
TPM3-208ENST00000341485 UBL4AP11441 157 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms