RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CXXC1Q9P0U4 656 aaPredicted RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 FBXO7Q9Y3I1 522 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 TMEM129A0AVI4 362 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 GPR137BO60478 399 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 HOXB9P17482 250 aaPredicted RBP10.69□□□□□ -0.7
VPS39-201ENST00000318006 CPT2P23786 658 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 HTR1FP30939 366 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 GLO1Q04760 184 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 PLP2Q04941 152 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 NSDHLQ15738 373 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 HEPHL1Q6MZM0 1159 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 CLRN3Q8NCR9 226 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 SLC2A12Q8TD20 617 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 UBTD2Q8WUN7 234 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 NIPSNAP3BQ9BS92 247 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 GABARAPL1Q9H0R8 117 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 OR52A5Q9H2C5 316 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 EVA1AQ9H8M9 152 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 NDRG3Q9UGV2 375 aa10.69□□□□□ -0.7
VPS39-201ENST00000318006 MYO10Q9HD67 2058 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 H0YIV9 168 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 H3BQ06 376 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 ZNF195O14628 629 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SEC14L5O43304 696 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 OR2T7P0C7T2 308 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 EPHA1P21709 976 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 ELAVL4P26378 380 aaKnown RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 ARNTP27540 789 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 OPRD1P41143 372 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SRP9P49458 86 aaKnown RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 ZBTB37Q5TC79 503 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 DLEU7Q6UYE1 221 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 HIST2H3AQ71DI3 136 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TRAPPC6BQ86SZ2 158 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 OR2T27Q8NH04 317 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 FAM213BQ8TBF2 198 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SPATA6Q9NWH7 488 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 CPNE7Q9UBL6 633 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 CD207Q9UJ71 328 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 FBXL4Q9UKA2 621 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 A0A0A6YYJ9 748 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 KIR2DS5A0A0G2JLQ3 304 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 A0A0G2JNG1 304 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 A0A0J9YY10 115 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TMX2-CTNND1H3BSU7 103 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 KIR2DS3K7RE56 304 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 AIPO00170 330 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 ITGB2P05107 769 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 JMJD7P0C870 316 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 EMP2P54851 167 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 PRDX1Q06830 199 aaKnown RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 KIR2DS5Q14953 304 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 C1QTNF12Q5T7M4 302 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TEX37Q96LM6 180 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SORCS2Q96PQ0 1159 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 MACROD1Q9BQ69 325 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 ACSS1Q9NUB1 689 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 PRELID3BQ9Y3B1 194 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SCN9AQ15858 1988 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TO15178 435 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 IGLV3-25P01717 112 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 GABRB1P18505 474 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 HIST1H1TP22492 207 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 IMPA1P29218 277 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SERTAD2Q14140 314 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 C6orf132Q5T0Z8 1188 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 NDUFAF7Q7L592 441 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 VRK2Q86Y07 508 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 RNF113BQ8IZP6 322 aaKnown RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 OR5L2Q8NGL0 311 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 NANPQ8TBE9 248 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 FAM71F1Q96KD3 344 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 MYADMQ96S97 322 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SLCO5A1Q9H2Y9 848 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 PRSS38A1L453 326 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 FOXE1O00358 373 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 MAGEB4O15481 346 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 BRINP1O60477 761 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TPOP07202 933 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 CSF3P09919 207 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 PSMB5P28074 263 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TGFBR1P36897 503 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TAS2R46P59540 309 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SPOCK1Q08629 439 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 RSPO2Q6UXX9 243 aaPredicted RBP10.68□□□□□ -0.7
VPS39-201ENST00000318006 DPPA2Q7Z7J5 298 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 PLPP5Q8NEB5 264 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 OR6M1Q8NGM8 313 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 SLC38A5Q8WUX1 472 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 MIB2Q96AX9 1013 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TUBB1Q9H4B7 451 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 NDUFB11Q9NX14 153 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 EHFQ9NZC4 300 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 RARRES3Q9UL19 164 aa10.68□□□□□ -0.7
VPS39-201ENST00000318006 TRIM77I1YAP6 450 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 BHLHE40O14503 412 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 PER3P56645 1201 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 CTBSQ01459 385 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 ACSM1Q08AH1 577 aa10.67□□□□□ -0.7
VPS39-201ENST00000318006 Q499Y3 187 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms