RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NCBP2P52298 156 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS35-201ENST00000299138 RAP1AP62834 184 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TIAL1Q01085 375 aaKnown RBP eCLIP5.96□□□□□ -1.46
VPS35-201ENST00000299138 NOGQ13253 232 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 EBPQ15125 230 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 OGFOD3Q6PK18 319 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 BRICD5Q6PL45 260 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TMEM179BQ7Z7N9 219 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 ST8SIA4Q92187 359 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 LCORQ96JN0 433 aaPredicted RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 KATNB1Q9BVA0 655 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SCPEP1Q9HB40 452 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 GRHPRQ9UBQ7 328 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 BOLA1Q9Y3E2 137 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 MEGF11A6BM72 1044 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 ZNF587BE7ETH6 402 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CLEC3AO75596 197 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 POP7O75817 140 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 HTR3BO95264 441 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 KITLGP21583 273 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 HYAL2Q12891 473 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SMN1Q16637 294 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 ISXQ2M1V0 245 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CXCL17Q6UXB2 119 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 KLBQ86Z14 1044 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 THAP3Q8WTV1 239 aaPredicted RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 CHST8Q9H2A9 424 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 LHX3Q9UBR4 397 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TBC1D3KA0A087X1G2 549 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TBC1D3BA6NDS4 549 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TBC1D3FA6NER0 549 aaPredicted RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 MAN2B1O00754 1011 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TAPBPO15533 448 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TREHO43280 583 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 METTL15P1P0C7V9 234 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CSF2RAP15509 400 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 RPL10P27635 214 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 MC3RP41968 323 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 BDKRB1P46663 353 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 RPL29P47914 159 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 HOXA1P49639 335 aaPredicted RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 RNF212Q495C1 297 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SOHLH1Q5JUK2 328 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TBC1D3GQ6DHY5 549 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 RPL22L1Q6P5R6 122 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 TMIGD1Q6UXZ0 262 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OR13C5Q8NGS8 318 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OR9A1PQ8NGU1 263 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 FIBINQ8TAL6 211 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SMIM4Q8WVI0 70 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 ESAMQ96AP7 390 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 ALX4Q9H161 411 aaPredicted RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 CHRDQ9H2X0 955 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OR1A1Q9P1Q5 309 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CYB5BO43169 146 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CSO75390 466 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 CALCBP10092 127 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 OMGP23515 440 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SLC6A6P31641 620 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 B2MP61769 119 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 DHCR24Q15392 516 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CLEC12BQ2HXU8 276 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 MAJINQ3KP22 176 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TOR2AQ5JU69 321 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 DNM1P34Q6PK57 102 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CEACAM20Q6UY09 585 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 RPS27LQ71UM5 84 aaKnown RBP5.96□□□□□ -1.46
VPS35-201ENST00000299138 FAM122BQ7Z309 247 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CDH26Q8IXH8 852 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 SOSTQ9BQB4 213 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 NIPSNAP3BQ9BS92 247 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 PIGMQ9H3S5 423 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 TMPRSS11EQ9UL52 423 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 CLEC4EQ9ULY5 219 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 HS3ST2Q9Y278 367 aa5.96□□□□□ -1.46
VPS35-201ENST00000299138 FBLL1A6NHQ2 334 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 TMEM88BA6NKF7 163 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 CCL22O00626 93 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 IGHA1P01876 353 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TCRBP04435 133 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 QDPRP09417 244 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ELAVL4P26378 380 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 APEX1P27695 318 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 TEAD1P28347 426 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 CCKBRP32239 447 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 TRHRP34981 398 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 SNCAP37840 140 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 NAA10P41227 235 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 PSMB2P49721 201 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC7A9P82251 487 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SP3Q02447 781 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 AKR1C1Q04828 323 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC14A1Q13336 389 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 RAB11BQ15907 218 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SGPP2Q8IWX5 399 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 REM2Q8IYK8 340 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 METTL21AQ8WXB1 218 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 FOXRED1Q96CU9 486 aaPredicted RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 SYT3Q9BQG1 590 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 IKZF5Q9H5V7 419 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms