RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 TANGO2Q6ICL3 276 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 PRR18Q8N4B5 295 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 KCNE4Q8WWG9 221 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 IGLV3-10A0A075B6K4 115 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 GABRA2P47869 451 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 HNRNPFP52597 415 aaKnown RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 CLDN17P56750 224 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 LTBQ06643 244 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 SCGB2A2Q13296 93 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 BRICD5Q6PL45 260 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 NPSR1Q6W5P4 371 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 GLB1L2Q8IW92 636 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 NKAIN3Q8N8D7 197 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 GAREM1Q9H706 876 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 PSORS1C1Q9UIG5 152 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 TIMM8BQ9Y5J9 83 aaPredicted RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 A0A1W2PS29 197 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 OR6C65A6NJZ3 312 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 TARM1B6A8C7 271 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 AQP2P41181 271 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 IL13RA1P78552 427 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 FAM57BQ71RH2 274 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 WDR76Q9H967 626 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 OR6C76A6NM76 312 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 SSX4O60224 188 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 TRIM61Q5EBN2 209 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 PAPD4Q6PIY7 484 aaKnown RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 EGLN1Q9GZT9 426 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 TMED7-TICAM2A0A0A6YYA0 188 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 C1orf196B1AJZ1 125 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 SPDEFO95238 335 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 UTS2O95399 124 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 GIFP27352 417 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 PXNP49023 591 aaPredicted RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 RPS27AP62979 156 aaKnown RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 UBA52P62987 128 aaKnown RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 MFAP5Q13361 173 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 SLC22A6Q4U2R8 563 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 NXF5Q9H1B4 397 aaKnown RBP17.74■□□□□ 0.43
UPF1-201ENST00000262803 TUBB1Q9H4B7 451 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 FGF21Q9NSA1 209 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 TMED7Q9Y3B3 224 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 ETV7Q9Y603 341 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 FURINP09958 794 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 SQSTM1Q13501 440 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 P2RY14Q15391 338 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 MEX3BQ6ZN04 569 aaKnown RBP17.73■□□□□ 0.43
UPF1-201ENST00000262803 ELP4Q96EB1 424 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 HRASLS5Q96KN8 279 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 KCNJ16Q9NPI9 418 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 DECR2Q9NUI1 292 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 ASIC5Q9NY37 505 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 GABRPO00591 440 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 STK17BO94768 372 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 TRHRP34981 398 aaPredicted RBP17.73■□□□□ 0.43
UPF1-201ENST00000262803 ZNF740Q8NDX6 193 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 OR2M2Q96R28 347 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 GCM1Q9NP62 436 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 VSX1Q9NZR4 365 aaPredicted RBP17.73■□□□□ 0.43
UPF1-201ENST00000262803 ALOX12BO75342 701 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 SERPINA2P20848 420 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 TBC1D28Q2M2D7 210 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 TMEM207Q6UWW9 146 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 LUZP4Q9P127 313 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 A8MVM7 634 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 ARNTP27540 789 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 PTPN6P29350 595 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 CCR5P51681 352 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 CXADRP78310 365 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 TATDN3Q17R31 274 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 SHISA6Q6ZSJ9 500 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 VRK3Q8IV63 474 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 NANPQ8TBE9 248 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 TEX37Q96LM6 180 aa17.73■□□□□ 0.43
UPF1-201ENST00000262803 MEIS3P1A6NDR6 274 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 OR1D4P47884 311 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 ZNF133P52736 654 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 SPPL3Q8TCT6 385 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 RLN3Q8WXF3 142 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 TIMD4Q96H15 378 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 COQ3Q9NZJ6 369 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 PRAMEF25A6NGN4 478 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 AP1G1O43747 822 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 VAMP5O95183 116 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 GABRA5P31644 462 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 PTGER4P35408 488 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CYB561P49447 251 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 PDLIM3Q53GG5 364 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 UBALD2Q8IYN6 164 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 SLC7A5P1Q8MH63 180 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 ZNF321PQ8N8H1 164 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 STK35Q8TDR2 534 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 ANKRD9Q96BM1 317 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 PHF7Q9BWX1 381 aaPredicted RBP17.72■□□□□ 0.43
UPF1-201ENST00000262803 SLC22A23A1A5C7 686 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 PMS2P1A4D2B8 440 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A6P0DMU7 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A5P0DMU8 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A7P0DMV0 189 aa17.72■□□□□ 0.43
UPF1-201ENST00000262803 CT45A8P0DMV1 189 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms