RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DGAT2Q96PD7 388 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ORAI3Q9BRQ5 295 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 PRTFDC1Q9NRG1 225 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 GPR27Q9NS67 375 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 UCKL1Q9NWZ5 548 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SLC23A1Q9UHI7 598 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 A0A1B0GVI7 797 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 IFITM5A6NNB3 132 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 TNFRSF10AO00220 468 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 IMPA2O14732 288 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SRPX2O60687 465 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 WNT1P04628 370 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SULT1A3P0DMM9 295 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SULT1A4P0DMN0 295 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 DPP4P27487 766 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 GDNFP39905 211 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 PSMB10P40306 273 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ERVK-25P63136 954 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 HHEXQ03014 270 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SRSF5Q13243 272 aaKnown RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SNTB2Q13425 540 aaKnown RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 COL13A1Q5TAT6 717 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SLC6A19Q695T7 634 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 TAF8Q7Z7C8 310 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SLC35F3Q8IY50 421 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF615Q8N8J6 731 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 EXD3Q8N9H8 876 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 OR56B4Q8NH76 319 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF431Q8TF32 576 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 RASD2Q96D21 266 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 DERL3Q96Q80 235 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 GAS2L1Q99501 681 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 IRF2BPLQ9H1B7 796 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 DIABLOQ9NR28 239 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 MEIKINA0A087WXM9 373 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 SPTY2D1-AS1A0A0U1RR47 76 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 TCRBV21S2A2A0A5A6 115 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 PRR32B1ATL7 298 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF593O00488 134 aaPredicted RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 GALNSP34059 522 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ADH7P40394 386 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CCR5P51681 352 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CCR6P51684 374 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 RNASE12Q5GAN4 147 aaKnown RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZBTB37Q5TC79 503 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 FNDC7Q5VTL7 733 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 KCTD20Q7Z5Y7 419 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF687Q8N1G0 1237 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 LRRC75AQ8NAA5 344 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZSCAN1Q8NBB4 408 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 AVL9Q8NBF6 648 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 OR6C4Q8NGE1 309 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 RPLP0P6Q8NHW5 317 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 RGP1Q92546 391 aaPredicted RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 SLC25A38Q96DW6 304 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 MRI1Q9BV20 369 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 OR10A5Q9H207 317 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 NKX2-4Q9H2Z4 354 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 B3GNT2Q9NY97 397 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ELF5Q9UKW6 265 aaPredicted RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 MGAT4AQ9UM21 535 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 HIF3AQ9Y2N7 669 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 SLC6A5Q9Y345 797 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 PIAS3Q9Y6X2 628 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CLDN4O14493 209 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ITGA10O75578 1167 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 NSA2O95478 260 aaKnown RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 MT-ND4P03905 459 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CLPSP04118 112 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ADRB1P08588 477 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 PNMTP11086 282 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CXCL3P19876 107 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CDKN2AP42771 156 aaKnown RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 NANOS3P60323 173 aaKnown RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 RPL6Q02878 288 aaKnown RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 CAMK2BQ13554 666 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 FZD2Q14332 565 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ST3GAL2Q16842 350 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 GXYLT1Q4G148 440 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 FAM69AQ5T7M9 428 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 PRSS45Q7RTY3 260 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 FAM122BQ7Z309 247 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ATG4DQ86TL0 474 aaPredicted RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 EID2Q8N6I1 236 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 OR6K6Q8NGW6 343 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 MOSPD2Q8NHP6 518 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF285Q96NJ3 590 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ALG12Q9BV10 488 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 AUNIPQ9H7T9 357 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 AKAP7Q9P0M2 348 aaPredicted RBP11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF222Q9UK12 451 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 MOKQ9UQ07 419 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 ERVK-19Q9WJR5 959 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 OR10H1Q9Y4A9 318 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 NPTNQ9Y639 398 aa11.66□□□□□ -0.54
LINC00540-203ENST00000631321 GPR171O14626 319 aa11.65□□□□□ -0.54
LINC00540-203ENST00000631321 TXNDC12O95881 172 aa11.65□□□□□ -0.54
LINC00540-203ENST00000631321 TPOP07202 933 aa11.65□□□□□ -0.54
LINC00540-203ENST00000631321 CCR9P51686 369 aa11.65□□□□□ -0.54
LINC00540-203ENST00000631321 PER3P56645 1201 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms