RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 BTLAQ7Z6A9 289 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 MEX3DQ86XN8 651 aaKnown RBP8.3□□□□□ -1.08
VCL-206ENST00000623461 ZNF681Q96N22 645 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 TMPRSS5Q9H3S3 457 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 USP36Q9P275 1121 aaKnown RBP8.3□□□□□ -1.08
VCL-206ENST00000623461 LEUTXA8MZ59 168 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 LEFTY2O00292 366 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 ADH1BP00325 375 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 IL5P05113 134 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 SERPINE2P07093 398 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 PAX6P26367 422 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 TGFBR1P36897 503 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 EPHA5P54756 1037 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 SYPL1Q16563 259 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 SOWAHCQ53LP3 525 aaPredicted RBP8.3□□□□□ -1.08
VCL-206ENST00000623461 RNF111Q6ZNA4 994 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 OR9A2Q8NGT5 310 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 NEURL3Q96EH8 262 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 ZNF385DQ9H6B1 395 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 HRASLSQ9HDD0 168 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 TAS2R5Q9NYW4 299 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 AKAP11Q9UKA4 1901 aa8.3□□□□□ -1.08
VCL-206ENST00000623461 BET1O15155 118 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ITGB2P05107 769 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 CSNK1DP48730 415 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RBM23Q86U06 439 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 VRK2Q86Y07 508 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 OR56B1Q8NGI3 324 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 WDR77Q9BQA1 342 aaPredicted RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 IL20Q9NYY1 176 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 GJB5O95377 273 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 SPOCK1Q08629 439 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 DEFB134Q4QY38 66 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 CD300LGQ6UXG3 332 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 NAXEQ8NCW5 288 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 LHFPL5Q8TAF8 219 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RELTQ969Z4 430 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 DDIT4LQ96D03 193 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 REV1Q9UBZ9 1251 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 TRAV27A0A087WT01 109 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ACOD1A6NK06 481 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 FAM171A2A8MVW0 826 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 FRS3O43559 492 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 MMP2P08253 660 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 FURINP09958 794 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 H3F3AP84243 136 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 C1QTNF3Q9BXJ4 246 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 ACER3Q9NUN7 267 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RHBDD3Q9Y3P4 386 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ECM29Q5VYK3 1845 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 NPIPA2E9PIF3 369 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 NPIPA3F8WFD2 350 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 SCAMP1O15126 338 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 GYPBP06028 91 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 LPLP06858 475 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RAD52P43351 418 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RAB28P51157 221 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 FAM209AQ5JX71 171 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 MEX3BQ6ZN04 569 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 ERN2Q76MJ5 926 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 OR4D6Q8NGJ1 314 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 BORCS7Q96B45 105 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 TRMT2BQ96GJ1 504 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 TMEM68Q96MH6 324 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 NAA11Q9BSU3 229 aaPredicted RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 LINC00862A6NCI5 91 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 BCL2L11O43521 198 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 TACR1P25103 407 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 MMP15P51511 669 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RANP62826 216 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 COTL1Q14019 142 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 GLYR1Q49A26 553 aaPredicted RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 PRSS58Q8IYP2 241 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 SLC45A1Q9Y2W3 748 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 OR5H14A6NHG9 310 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 HLA-HP01893 362 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 RAC2P15153 192 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 POU3F4P49335 361 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 TPBGQ13641 420 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ALKBH1Q13686 389 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 SGCBQ16585 318 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ZNF239Q16600 458 aaKnown RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 CCNJQ5T5M9 372 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 PRAMEF8Q5VWM4 474 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 PRAMEF7Q5VXH5 474 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ZNF776Q68DI1 518 aaPredicted RBP8.29□□□□□ -1.08
VCL-206ENST00000623461 SLC16A12Q6ZSM3 486 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 PRSS45Q7RTY3 260 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 OR52I2Q8NH67 350 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 ZDHHC5Q9C0B5 715 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 C5AR2Q9P296 337 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 USP3Q9Y6I4 520 aa8.29□□□□□ -1.08
VCL-206ENST00000623461 UMAD1C9J7I0 102 aa8.28□□□□□ -1.08
VCL-206ENST00000623461 SCO2O43819 266 aa8.28□□□□□ -1.08
VCL-206ENST00000623461 POLR2HP52434 150 aaKnown RBP8.28□□□□□ -1.08
VCL-206ENST00000623461 DGCR2P98153 550 aa8.28□□□□□ -1.08
VCL-206ENST00000623461 TAF9Q16594 264 aa8.28□□□□□ -1.08
VCL-206ENST00000623461 IGSF11Q5DX21 431 aa8.28□□□□□ -1.08
VCL-206ENST00000623461 ATF6BQ99941 703 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms