RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NAAAQ02083 359 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 EMX2Q04743 252 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 POU4F2Q12837 409 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 ADIPOQQ15848 244 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 PGS1Q32NB8 556 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 NDUFAF6Q330K2 333 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 TBRG1Q3YBR2 411 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 GPAT3Q53EU6 434 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 HIKESHIQ53FT3 197 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 XKR7Q5GH72 579 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 FAM209AQ5JX71 171 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 C9orf135Q5VTT2 229 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 IL23RQ5VWK5 629 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 C5orf46Q6UWT4 87 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 IL17RELQ6ZVW7 336 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CROCCP2Q86T23 111 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 GPAT4Q86UL3 456 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 ADGRG3Q86Y34 549 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CCDC103Q8IW40 242 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 RIMKLAQ8IXN7 391 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 PEX5LQ8IYB4 626 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 LRRC34Q8IZ02 419 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 RIBC1Q8N443 379 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 OR5D16Q8NGK9 328 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 OR1K1Q8NGR3 316 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 OR51F2Q8NH61 342 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 OR5AK3PQ8NH89 298 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 MZB1Q8WU39 189 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 FAM216AQ8WUB2 273 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 XAGE5Q8WWM1 108 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 GCDHQ92947 438 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 ROPN1LQ96C74 230 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 TUBGCP3Q96CW5 907 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 AURKBQ96GD4 344 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 TRNT1Q96Q11 434 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 KLHDC3Q9BQ90 382 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 ZNF416Q9BWM5 594 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 GATA5Q9BWX5 397 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 LINC00470Q9BZP3 86 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 MTHFD2LQ9H903 347 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 MKS1Q9NXB0 559 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CALML5Q9NZT1 146 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 OSGIN1Q9UJX0 560 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 ZNF346Q9UL40 294 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 USP22Q9UPT9 525 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 RCE1Q9Y256 329 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 TMED7Q9Y3B3 224 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 KCNE3Q9Y6H6 103 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 YLPM1P49750 1951 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 TRAV20A0A0B4J274 112 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 TMEM247A6NEH6 219 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 LIPT2A6NK58 231 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 RPL36A-HNRNPH2H7BZ11 118 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 M0R233 179 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 KLF11O14901 512 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SYNGR3O43761 229 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 OR2T1O43869 369 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SCN2BO60939 215 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SLC43A1O75387 559 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SASH3O75995 380 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 LY6HO94772 140 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 IGLV1-44P01699 117 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 RPLP1P05386 114 aaKnown RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 VIMP08670 466 aaKnown RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 OR12D1P0DN82 309 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 CBR1P16152 277 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 CDH2P19022 906 aaPredicted RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 EFNA1P20827 205 aaPredicted RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 GATA3P23771 443 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 TACR3P29371 465 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 ECHS1P30084 290 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 GPR6P46095 362 aaPredicted RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 CBX1P83916 185 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 RIN1Q13671 783 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 DAG1Q14118 895 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 MFSD13AQ14CX5 517 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 MOGQ16653 247 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 PDCD4Q53EL6 469 aaKnown RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 PRAMEF8Q5VWM4 474 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 PRAMEF7Q5VXH5 474 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 WBP2NLQ6ICG8 309 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 TYW3Q6IPR3 259 aaKnown RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 LRRC74BQ6ZQY2 392 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SPATA21Q7Z572 469 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 C10orf107Q8IVU9 208 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 ANKS4BQ8N8V4 417 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 PIK3C3Q8NEB9 887 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 OR4A15Q8NGL6 344 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 MGARPQ8TDB4 240 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 STK35Q8TDR2 534 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 CKAP2Q8WWK9 683 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 RDH5Q92781 318 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 BCL2L2Q92843 193 aaPredicted RBP5.46□□□□□ -1.54
CUX1-220ENST00000607092 SLC35B4Q969S0 331 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 TMEM186Q96B77 213 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 TESCQ96BS2 214 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 NEURL3Q96EH8 262 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 SNX18Q96RF0 628 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 DOK1Q99704 481 aa5.46□□□□□ -1.54
CUX1-220ENST00000607092 C1orf50Q9BV19 199 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms