RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 RND1Q92730 232 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 BPIFA2Q96DR5 249 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 TUBA1CQ9BQE3 449 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SLC19A3Q9BZV2 496 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 SLC25A19Q9HC21 320 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 MMP25Q9NPA2 562 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 NPDC1Q9NQX5 325 aaPredicted RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 PLCXD1Q9NUJ7 323 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 CARD8Q9Y2G2 431 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 HRH3Q9Y5N1 445 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 CDH10Q9Y6N8 788 aa9.2□□□□□ -0.94
SS18-210ENST00000578700 PHF3Q92576 2039 aaKnown RBP9.2□□□□□ -0.94
SS18-210ENST00000578700 PRRC2AP48634 2157 aaKnown RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 IRGMA1A4Y4 181 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 EFCAB10A6NFE3 127 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 WWP2O00308 870 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 KPNA4O00629 521 aaPredicted RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 PRKNO60260 465 aaPredicted RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 TOXO94900 526 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TFAP2AP05549 437 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 KLK2P20151 261 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 CHRNB4P30926 498 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 GPR4P46093 362 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 GIPRP48546 466 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 PCYT1AP49585 367 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 MEOX1P50221 254 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 CTBP2P56545 445 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 MVKQ03426 396 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 PMPCAQ10713 525 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 CBFBQ13951 182 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 SNAPC1Q16533 368 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TMEM236Q5W0B7 351 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 C12orf73Q69YU5 71 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 KCTD8Q6ZWB6 473 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TMPRSS11FQ6ZWK6 438 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 MARCH3Q86UD3 253 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 SATL1Q86VE3 508 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TGIF2LYQ8IUE0 185 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 DMRTC2Q8IXT2 367 aaPredicted RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 STX19Q8N4C7 294 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 RPRMLQ8N4K4 120 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 FAM71CQ8NEG0 241 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 OR2T33Q8NG76 320 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 LILRB4Q8NHJ6 448 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 FAM57AQ8TBR7 257 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 FANK1Q8TC84 345 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 DGCR14Q96DF8 476 aaKnown RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 PRSS27Q9BQR3 290 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 COPS4Q9BT78 406 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TSSK6Q9BXA6 273 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 POLDIP3Q9BY77 421 aaKnown RBP9.19□□□□□ -0.94
SS18-210ENST00000578700 C12orf10Q9HB07 376 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 MED17Q9NVC6 651 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TVP23BQ9NYZ1 205 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 FLRT3Q9NZU0 649 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 MYOTQ9UBF9 498 aa9.19□□□□□ -0.94
SS18-210ENST00000578700 TRIM64CA6NLI5 447 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 CLCA1A8K7I4 914 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 FAM47E-STBD1D6RA91 191 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 E9PQ18 207 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SCO2O43819 266 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 XPNPEP2O43895 674 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 PIP5K1CO60331 668 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 NME2P1O60361 137 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 THY1P04216 161 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 FUT4P22083 530 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 NME2P22392 152 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 CXCR1P25024 350 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 EVI2BP34910 448 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SLC1A3P43003 542 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 HTR3AP46098 478 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SLC9A3P48764 834 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 CYB561P49447 251 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 P2RX1P51575 399 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SH3BGRP55822 239 aaPredicted RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 CRYZQ08257 329 aaKnown RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 C17orf67Q0P5P2 114 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SNTB1Q13884 538 aaKnown RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 CD226Q15762 336 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 NEDD8Q15843 81 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 NDUFAF6Q330K2 333 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 ZBED5Q49AG3 693 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 FNDC7Q5VTL7 733 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 OPN5Q6U736 354 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 Q71RC1 249 aaPredicted RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 OAFQ86UD1 273 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SULF2Q8IWU5 870 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 DND1Q8IYX4 353 aaKnown RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 C10orf53Q8N6V4 93 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 POGLUT1Q8NBL1 392 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 OR5W2Q8NH69 310 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 B4GALNT2Q8NHY0 566 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 TMEM234Q8WY98 164 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 RORBQ92753 470 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 RFKQ969G6 155 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SGTBQ96EQ0 304 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 SH3YL1Q96HL8 342 aaPredicted RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 DEFB127Q9H1M4 99 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 LIME1Q9H400 295 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 DUSP21Q9H596 190 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms