RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SIRT3Q9NTG7 399 aaPredicted RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 LEF1Q9UJU2 399 aaPredicted RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 FAF1Q9UNN5 650 aaPredicted RBP15.36■□□□□ 0.05
CLK3-227ENST00000570296 DSPPQ9NZW4 1301 aa15.36■□□□□ 0.05
CLK3-227ENST00000570296 IGHV1-69-2A0A0G2JMI3 117 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 A0A1W2PPW3 197 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 ZNF503-AS2A6NEH8 195 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 TRIM49D1C9J1S8 452 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 UPK3AO75631 287 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 SEC14L2O76054 403 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 PRB2P02812 416 aaPredicted RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 SBK3P0C264 359 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 CCNA2P20248 432 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 HTR3AP46098 478 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 LOXL3P58215 753 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 ARF1P84077 181 aaKnown RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 ROR2Q01974 943 aaKnown RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 LCP2Q13094 533 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 PDE7AQ13946 482 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 FXNQ16595 210 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 GLIPR1L2Q4G1C9 344 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 GPAT4Q86UL3 456 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 RELL1Q8IUW5 271 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 TMEM99Q8N816 258 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 MRAPQ8TCY5 172 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 TRIM44Q96DX7 344 aaPredicted RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 MRRFQ96E11 262 aaKnown RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 METTL2AQ96IZ6 378 aaKnown RBP15.35■□□□□ 0.05
CLK3-227ENST00000570296 KCNA7Q96RP8 456 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 SDF2Q99470 211 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 GAL3ST1Q99999 423 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 SH3BP4Q9P0V3 963 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 KCNE5Q9UJ90 142 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 NOTCH3Q9UM47 2321 aa15.35■□□□□ 0.05
CLK3-227ENST00000570296 AQP7P3A6NL99 342 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 C17orf100A8MU93 164 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 RPL36A-HNRNPH2H7BZ11 118 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 ZNF432O94892 652 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 ZNF35P13682 527 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 MAP2K6P52564 334 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 CCL8P80075 99 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 RELBQ01201 579 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 ZNF154Q13106 437 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 PDCD1Q15116 288 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 C2orf68Q2NKX9 166 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 TRMT5Q32P41 509 aaKnown RBP15.34■□□□□ 0.05
CLK3-227ENST00000570296 TRIM46Q7Z4K8 759 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 TMEM151AQ8N4L1 468 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 OR56A1Q8NGH5 318 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 ST7LQ8TDW4 575 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 DCAKDQ8WVC6 231 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 MRI1Q9BV20 369 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 SERHL2Q9H4I8 314 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 GPATCH2Q9NW75 528 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 NKIRAS2Q9NYR9 191 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 C1RLQ9NZP8 487 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 DUSP13Q9UII6 198 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 GPR160Q9UJ42 338 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 PPP2R2CQ9Y2T4 447 aa15.34■□□□□ 0.05
CLK3-227ENST00000570296 TMED7-TICAM2A0A0A6YYA0 188 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 CENPVL1A0A0U1RR11 272 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 C5orf63A6NC05 138 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 GPANK1O95872 356 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 GPIP06744 558 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 RYKP34925 604 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 PGM1P36871 562 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 GPR68Q15743 365 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 FAM189A2Q15884 450 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 UAP1Q16222 522 aaPredicted RBP15.33■□□□□ 0.04
CLK3-227ENST00000570296 NKPD1Q17RQ9 610 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 SAMD5Q5TGI4 173 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 GKAP1Q5VSY0 366 aaPredicted RBP15.33■□□□□ 0.04
CLK3-227ENST00000570296 NIPAL3Q6P499 406 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 TMEM154Q6P9G4 183 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 EMBQ6PCB8 327 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 GTF3AQ92664 365 aaKnown RBP15.33■□□□□ 0.04
CLK3-227ENST00000570296 TMEM237Q96Q45 408 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 HINT3Q9NQE9 182 aaKnown RBP15.33■□□□□ 0.04
CLK3-227ENST00000570296 MMP26Q9NRE1 261 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 FZR1Q9UM11 496 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 SLC35A3Q9Y2D2 325 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 POLR3KQ9Y2Y1 108 aaPredicted RBP15.33■□□□□ 0.04
CLK3-227ENST00000570296 TMED7Q9Y3B3 224 aa15.33■□□□□ 0.04
CLK3-227ENST00000570296 TMEM72A0PK05 275 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 CCDC188H7C350 402 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 HOXA3O43365 443 aaPredicted RBP15.32■□□□□ 0.04
CLK3-227ENST00000570296 AKAP10O43572 662 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 UGT2B17O75795 530 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 CLPXO76031 633 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 AKR7A3O95154 331 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 VAMP5O95183 116 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 ZNF12P17014 697 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 MAGEA4P43358 317 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 CAPZA2P47755 286 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 TP53BP2Q13625 1128 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 KIAA0040Q15053 153 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 HFEQ30201 348 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 FAM205BPQ63HN1 556 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 TMEM225Q6GV28 225 aa15.32■□□□□ 0.04
CLK3-227ENST00000570296 CREB3L2Q70SY1 520 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms