RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CCDC167Q9P0B6 97 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 RPS6KB2Q9UBS0 482 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 PRDM4Q9UKN5 801 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 AMDHD2Q9Y303 409 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 ABCA2Q9BZC7 2435 aa8.95□□□□□ -0.98
LDLR-214ENST00000560628 TLN2Q9Y4G6 2542 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 ELOA3DA6NLF2 546 aaPredicted RBP8.94□□□□□ -0.98
LDLR-214ENST00000560628 TMEM229AB2RXF0 380 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 TPST1O60507 370 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 NPIPB7O75200 414 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 UPK3AO75631 287 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 BMP2P12643 396 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 CBLP22681 906 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 NUDT6P53370 316 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 AQP5P55064 265 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 CDK6Q00534 326 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 EGR4Q05215 589 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 DMTNQ08495 405 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 FADDQ13158 208 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 RAB35Q15286 201 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 ELOA3BQ3SY89 546 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 GLIPR1L2Q4G1C9 344 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 AGKQ53H12 422 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 GCNT6Q5T4J0 391 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 C11orf71Q6IPW1 123 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 KLHL24Q6TFL4 600 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 DNM1P46Q6ZS02 220 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 LINGO2Q7L985 606 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 COMTD1Q86VU5 262 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 C17orf78Q8N4C9 275 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 ELOA3Q8NG57 546 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 MFSD8Q8NHS3 518 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 BBS10Q8TAM1 723 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 RNF217Q8TC41 542 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 STK35Q8TDR2 534 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 THOC1Q96FV9 657 aaKnown RBP8.94□□□□□ -0.98
LDLR-214ENST00000560628 MDFIQ99750 246 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 CCDC28BQ9BUN5 200 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 PTDSS2Q9BVG9 487 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 FKRPQ9H9S5 495 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 SLC52A3Q9NQ40 469 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 YAE1D1Q9NRH1 226 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 TMEM45AQ9NWC5 275 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 VAPAQ9P0L0 249 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 SEC14L4Q9UDX3 406 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 ADAM21Q9UKJ8 722 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 MOKQ9UQ07 419 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 RASD1Q9Y272 281 aa8.94□□□□□ -0.98
LDLR-214ENST00000560628 HEATR1Q9H583 2144 aaKnown RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 IGHV4-30-2A0A087WSY4 118 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 A0A096LPE4 126 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 A0A1B0GWA3 101 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 A0A1W2PPZ6 126 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 FTCDNL1E5RQL4 147 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ZNF587BE7ETH6 402 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ATP6V1G2-DDX39BF2Z307 99 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 GPRIN2O60269 458 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 VAMP5O95183 116 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 WNT11O96014 354 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TP53P04637 393 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 ARAFP10398 606 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 PNMTP11086 282 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ETS2P15036 469 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ZNF43P17038 809 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 HTR2AP28223 471 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 AQP1P29972 269 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 APOBEC3AP31941 199 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 MRPL19P49406 292 aaKnown RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 CLDN17P56750 224 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TUBA1BP68363 451 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TUBA4AP68366 448 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 NRF1Q16656 503 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TBRG1Q3YBR2 411 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TTMPQ5BVD1 217 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 LRIF1Q5T3J3 769 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 REEP3Q6NUK4 255 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 TUBA1AQ71U36 451 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ABHD12BQ7Z5M8 362 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 OR1K1Q8NGR3 316 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 DYDC1Q8WWB3 177 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 BCL2L2Q92843 193 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 TAAR8Q969N4 342 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ATP6V1G3Q96LB4 118 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 ALKBH3Q96Q83 286 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 IKZF5Q9H5V7 419 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 PIF1Q9H611 641 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.93□□□□□ -0.98
LDLR-214ENST00000560628 JMJD1CQ15652 2540 aa8.93□□□□□ -0.98
LDLR-214ENST00000560628 IGHV1-18A0A0C4DH31 117 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 CRLF1O75462 422 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 LY6HO94772 140 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 GTF2E2P29084 291 aaKnown RBP8.92□□□□□ -0.98
LDLR-214ENST00000560628 PRKAR1BP31321 381 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 UBE2NP61088 152 aaKnown RBP8.92□□□□□ -0.98
LDLR-214ENST00000560628 ARF1P84077 181 aaKnown RBP8.92□□□□□ -0.98
LDLR-214ENST00000560628 IL1RL1Q01638 556 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 ROR2Q01974 943 aaKnown RBP8.92□□□□□ -0.98
LDLR-214ENST00000560628 CHRNB3Q05901 458 aa8.92□□□□□ -0.98
LDLR-214ENST00000560628 C1DQ13901 141 aaKnown RBP8.92□□□□□ -0.98
LDLR-214ENST00000560628 SCARB2Q14108 478 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms