RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ZNF702PQ9H963 129 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 NT5MQ9NPB1 228 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 INPP5EQ9NRR6 644 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 NUDT15Q9NV35 164 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 TREM2Q9NZC2 230 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 SPATA7Q9P0W8 599 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 KIF25Q9UIL4 384 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 MMP17Q9ULZ9 603 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 ABCG2Q9UNQ0 655 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 COPS3Q9UNS2 423 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 TRAF3IP3Q9Y228 551 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 VSIG4Q9Y279 399 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 PEX16Q9Y5Y5 336 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 PNPLA6Q8IY17 1366 aa1.19□□□□□ -2.22
USP3-209ENST00000558925 COL5A2P05997 1499 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 PHLPP2Q6ZVD8 1323 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 IGHV3OR16-13A0A075B7E8 117 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 IGKV3D-20A0A0C4DH25 116 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 A0A0J9YXY3 114 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SERTM2A0A1B0GWG4 89 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 OR5B21A6NL26 309 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 E9PBE3 544 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TEX46H3BTG2 121 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 DLGAP1O14490 977 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 GOSR2O14653 212 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 LSM1O15116 133 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 DNAJB6O75190 326 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF780AO75290 641 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 LYPLA1O75608 230 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 TSPAN13O95857 204 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 LALBAP00709 142 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SEMG1P04279 462 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CRYGBP07316 175 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 UBTFL1P0CB47 393 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 KITLGP21583 273 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CHMLP26374 656 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 NTSP30990 170 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 VDAC2P45880 294 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 RGRP47804 291 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 GPM6AP51674 278 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 KPNA2P52292 529 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 PRRX1P54821 245 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CDH6P55285 790 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ATP5IP56385 69 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 STX17P56962 302 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CSNK1G2P78368 415 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ACVR1Q04771 509 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CHRNB3Q05901 458 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SCRN3Q0VDG4 424 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 BST2Q10589 180 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 MRPL28Q13084 256 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 OR5I1Q13606 314 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 HERPUD1Q15011 391 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ARL6IP1Q15041 203 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 RCN1Q15293 331 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SSX2Q16385 188 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF630Q2M218 657 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 RNF212Q495C1 297 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 XKR7Q5GH72 579 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SAMD4BQ5PRF9 694 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 LY6G6FQ5SQ64 297 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SLC25A30Q5SVS4 291 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TIGD3Q6B0B8 471 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SASS6Q6UVJ0 657 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TMEM107Q6UX40 140 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 HSDL2Q6YN16 418 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 IL34Q6ZMJ4 242 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 Q6ZN92 141 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 Q6ZSR3 168 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 RUFY3Q7L099 469 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF571Q7Z3V5 609 aaPredicted RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF546Q86UE3 836 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 VRK2Q86Y07 508 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TGIF2LXQ8IUE1 241 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 APOBEC3FQ8IUX4 373 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 ERI1Q8IV48 349 aaKnown RBP1.18□□□□□ -2.22
USP3-209ENST00000558925 NUDCD3Q8IVD9 361 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 PIANPQ8IYJ0 282 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 BBS5Q8N3I7 341 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 FTMTQ8N4E7 242 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 TMEM252Q8N6L7 170 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 LINC00612Q8N6U2 182 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ZNF740Q8NDX6 193 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CCDC148Q8NFR7 591 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 OR4F6Q8NGB9 312 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 OR9G1Q8NH87 305 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 PLPPR1Q8TBJ4 325 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 FANK1Q8TC84 345 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 AGR3Q8TD06 166 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 DCUN1D4Q92564 292 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ARPC1AQ92747 370 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 KIFAP3Q92845 792 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 NEIL2Q969S2 332 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 FGGYQ96C11 551 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 NUS1Q96E22 293 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 PAGE5Q96GU1 130 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 SEC22AQ96IW7 307 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 ITCHQ96J02 903 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 OR8B4Q96RC9 309 aa1.18□□□□□ -2.22
USP3-209ENST00000558925 CNN2Q99439 309 aaKnown RBP1.18□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms