RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SLC47A1Q96FL8 570 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 SENP5Q96HI0 755 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 FBXL20Q96IG2 436 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ZNF354BQ96LW1 612 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 DACH2Q96NX9 599 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 IP6K3Q96PC2 410 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 OR7D2Q96RA2 312 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 LMF1Q96S06 567 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PRR25Q96S07 402 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CSF3RQ99062 836 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 LPAR4Q99677 370 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 LMF2Q9BU23 707 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 IFT27Q9BW83 186 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PINK1Q9BXM7 581 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 GPR87Q9BY21 358 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 POLR2J2Q9GZM3 115 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 POLR2J3Q9H1A7 115 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 IKZF5Q9H5V7 419 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 IL1RAPQ9NPH3 570 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 PNO1Q9NRX1 252 aaKnown RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 OCIAD1Q9NX40 245 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 MAT2BQ9NZL9 334 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CRNNQ9UBG3 495 aaPredicted RBP4.68□□□□□ -1.66
LDLR-209ENST00000558528 ENOPH1Q9UHY7 261 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ZNF639Q9UID6 485 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ERVK-11Q9UQG0 969 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 B3GNT3Q9Y2A9 372 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 DTX4Q9Y2E6 619 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 CARD8Q9Y2G2 431 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 FAM96BQ9Y3D0 163 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 ORC6Q9Y5N6 252 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 MAU2Q9Y6X3 613 aa4.68□□□□□ -1.66
LDLR-209ENST00000558528 AHCTF1Q8WYP5 2266 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 OTOGQ6ZRI0 2925 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 IGKV3D-11A0A0A0MRZ8 115 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 C2orf92A0A1B0GVN3 265 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SPAARA0A1B0GVQ0 90 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GAGE12BA1L429 117 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GAGE12HA6NDE8 117 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 A8MUI8 341 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 B8ZZF3 427 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 C21orf140B9A014 251 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 H3BNH8 94 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ACOX3O15254 700 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 CSO75390 466 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 E2F6O75461 281 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 PRKRAO75569 313 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZFAND5O76080 213 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SORBS2O94875 1100 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 DDAH2O95865 285 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 HIST1H2ABP04908 130 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 IFNW1P05000 195 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 FESP07332 822 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 UQCRBP14927 111 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 HPGDP15428 266 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ACADSP16219 412 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 PPP3CBP16298 524 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 NCK1P16333 377 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 IL7RP16871 459 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 NAGAP17050 411 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TNFRSF1AP19438 455 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ATP6V1B2P21281 511 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 RBMS1P29558 406 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 RRM2P31350 389 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GABRA3P34903 492 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 IFNGR2P38484 337 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 RPP38P78345 283 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 BTG2P78543 158 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 RHAGQ02094 409 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 EEF1A2Q05639 463 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZNF155Q12901 538 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 SSPNQ14714 243 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TRIP10Q15642 601 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 SNAPC1Q16533 368 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 DECR1Q16698 335 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 LIN52Q52LA3 116 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 TRMT12Q53H54 448 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 CYBRD1Q53TN4 286 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZNF311Q5JNZ3 666 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 CXorf66Q5JRM2 361 aaPredicted RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 C6orf141Q5SZD1 244 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 FHL5Q5TD97 284 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 C1orf189Q5VU69 101 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 DHRS4L2Q6PKH6 230 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZBTB49Q6ZSB9 765 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 HIST3H2AQ7L7L0 130 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZNF550Q7Z398 422 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 GDF7Q7Z4P5 450 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZDHHC21Q8IVQ6 265 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 ZNF440Q8IYI8 595 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 DND1Q8IYX4 353 aaKnown RBP4.67□□□□□ -1.66
LDLR-209ENST00000558528 OR7G2Q8NG99 324 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 OR10S1Q8NGN2 331 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 OR5K1Q8NHB7 308 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 FBXO30Q8TB52 745 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 DNAJC9Q8WXX5 260 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 KAT2AQ92830 837 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 UCN3Q969E3 161 aa4.67□□□□□ -1.66
LDLR-209ENST00000558528 RNF31Q96EP0 1072 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms