RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TRAV36DV7A0A075B6V5 113 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ELOVL7A1L3X0 281 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 M0R082 166 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 NME4O00746 187 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 CHP2O43745 196 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 THY1P04216 161 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 GRPRP30550 384 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 LIPEQ05469 1076 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 TAB1Q15750 504 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 BEX5Q5H9J7 111 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 TMEM225Q6GV28 225 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ALKBH2Q6NS38 261 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 HACD2Q6Y1H2 254 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 WDR88Q6ZMY6 472 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 CARM1Q86X55 608 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ZIC4Q8N9L1 334 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ZNF417Q8TAU3 575 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ADAMTS16Q8TE57 1224 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 CMTM5Q96DZ9 223 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ZNF587Q96SQ5 575 aaPredicted RBP12.11□□□□□ -0.47
SHMT2-219ENST00000555563 TMEM43Q9BTV4 400 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 PCDHAC1Q9H158 963 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ASB6Q9NWX5 421 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 BAG5Q9UL15 447 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 RASD1Q9Y272 281 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 AP3M1Q9Y2T2 418 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 SH3GLB1Q9Y371 365 aa12.11□□□□□ -0.47
SHMT2-219ENST00000555563 ANKRD17O75179 2603 aaKnown RBP12.1□□□□□ -0.47
SHMT2-219ENST00000555563 TRAPPC13A5PLN9 417 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 KLF4O43474 513 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 OR2T1O43869 369 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 RAD51DO75771 328 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 VAMP5O95183 116 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 LYPD3O95274 346 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 IFNA14P01570 189 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 BGLAPP02818 100 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 CBLP22681 906 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 PRDX6P30041 224 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 KDELR2P33947 212 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 IST1P53990 364 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 FOXG1P55316 489 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-219ENST00000555563 FAPQ12884 760 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 STK11Q15831 433 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 CYBRD1Q53TN4 286 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 TSPO2Q5TGU0 170 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 SEZ6L2Q6UXD5 910 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 AAED1Q7RTV5 226 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 KDM8Q8N371 416 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 ZNF433Q8N7K0 673 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-219ENST00000555563 NINJ1Q92982 152 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 MOGAT1Q96PD6 335 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 EPYCQ99645 322 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 HOPXQ9BPY8 73 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-219ENST00000555563 ALG2Q9H553 416 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 SLC7A10Q9NS82 523 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 PARPBPQ9NWS1 579 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 TAS2R16Q9NYV7 291 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 B3GAT1Q9P2W7 334 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 SLC7A7Q9UM01 511 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 ARL2BPQ9Y2Y0 163 aa12.1□□□□□ -0.47
SHMT2-219ENST00000555563 LRRN3E7EW58 273 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 PDLIM1O00151 329 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 SHOX2O60902 331 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-219ENST00000555563 ATE1O95260 518 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 RAF1P04049 648 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 ITGA5P08648 1049 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 GGT1P19440 569 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 OR1E2P47887 323 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 GSK3BP49841 420 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 LTBQ06643 244 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 LINC00114Q6XXX2 140 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 DEF8Q6ZN54 512 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 CREB3L2Q70SY1 520 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 PIGWQ7Z7B1 504 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 EPHX4Q8IUS5 362 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 OR6S1Q8NH40 331 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 PLPPR2Q96GM1 343 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 TPD52L3Q96J77 140 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 USB1Q9BQ65 265 aaKnown RBP12.09□□□□□ -0.47
SHMT2-219ENST00000555563 SLCO5A1Q9H2Y9 848 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 CCM2LQ9NUG4 571 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-219ENST00000555563 ABCD2Q9UBJ2 740 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 UPB1Q9UBR1 384 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 B3GALT5Q9Y2C3 310 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 CORINQ9Y5Q5 1042 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 AKAP9Q99996 3911 aa12.09□□□□□ -0.47
SHMT2-219ENST00000555563 ABCA4P78363 2273 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 RAI1Q7Z5J4 1906 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 OR5H1A6NKK0 313 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 CXCR6O00574 342 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 KPNA4O00629 521 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 NQO1P15559 274 aaKnown RBP12.08□□□□□ -0.48
SHMT2-219ENST00000555563 DNASE1P24855 282 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 SELENOPP49908 381 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 NR1H2P55055 460 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 PSME3P61289 254 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 LGALS3BPQ08380 585 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 MFSD13AQ14CX5 517 aa12.08□□□□□ -0.48
SHMT2-219ENST00000555563 TESK1Q15569 626 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms