RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 OR5M1Q8NGP8 315 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 NT5C3BQ969T7 300 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 OR6C1Q96RD1 312 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 CBLCQ9ULV8 474 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 GABRA5P31644 462 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TLE4Q04727 773 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 DBPQ10586 325 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TMEM31Q5JXX7 168 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 MANEALQ5VSG8 457 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 MOCOSQ96EN8 888 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TRMT61AQ96FX7 289 aaKnown RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 CCDC74BQ96LY2 380 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 ZNF436Q9C0F3 470 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 INTS6Q9UL03 887 aaKnown RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 PCDHA9Q9Y5H5 950 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 ACTL7AQ9Y615 435 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TRIP12Q14669 1992 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 ZCWPW2A0A1B0GU75 182 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TNFRSF10AO00220 468 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 SNAPINO95295 136 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 HLA-HP01893 362 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 HNRNPA1P09651 372 aaKnown RBP eCLIP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 SUB1P53999 127 aaKnown RBP eCLIP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 NECAP1Q8NC96 275 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 OR13C2Q8NGS9 318 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 MRGPRX2Q96LB1 330 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 TGIF2Q9GZN2 237 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 PITHD1Q9GZP4 211 aaPredicted RBP6.43□□□□□ -1.38
SYNE2-216ENST00000555002 RDH14Q9HBH5 336 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 SLC35A3Q9Y2D2 325 aa6.43□□□□□ -1.38
SYNE2-216ENST00000555002 JRKO75564 520 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CD6P30203 668 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PLD6Q8N2A8 252 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 MS4A15Q8N5U1 240 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CHFRQ96EP1 664 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 TCTN2Q96GX1 697 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 C4orf36Q96KX1 117 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 FYTTD1Q96QD9 318 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 TRIB1Q96RU8 372 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CLSTN3Q9BQT9 956 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ASB4Q9Y574 426 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HS3ST1O14792 307 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HPRP00739 348 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PRKACBP22694 351 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HNRNPH3P31942 346 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 FAM74A1Q5RGS3 127 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PODNL1Q6PEZ8 512 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 L3MBTL4Q8NA19 623 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 BRIX1Q8TDN6 353 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 GPR62Q9BZJ7 368 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PREBQ9HCU5 417 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 SLC6A20Q9NP91 592 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CHST11Q9NPF2 352 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 RNF150Q9ULK6 438 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PRAMEF26H0Y7S4 382 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ONECUT2O95948 504 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 UBBP0CG47 229 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CDK4P11802 303 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 RPS27AP62979 156 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 UBA52P62987 128 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CXADRP78310 365 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 SLC25A11Q02978 314 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 LTBQ06643 244 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 OR14A16Q8NHC5 309 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PINX1Q96BK5 328 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 SLC35E1Q96K37 410 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HRASLS5Q96KN8 279 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 LGI1O95970 557 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CSNK1EP49674 416 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 GK3PQ14409 553 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 CLVS2Q5SYC1 327 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 H2BFWTQ7Z2G1 175 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 IGDCC3Q8IVU1 814 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 DNMT3BQ9UBC3 853 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 KLRC4-KLRK1H3BQV0 150 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 GPR12P47775 334 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PAFAH1B3Q15102 231 aaKnown RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ZNF417Q8TAU3 575 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 NDFIP1Q9BT67 221 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ZNF331Q9NQX6 463 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 DMAC2Q9NW81 257 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 EBF1Q9UH73 591 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 IGHV3-9P01782 118 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 UNGP13051 313 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 PTTG1IPP53801 180 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 VGLL2Q8N8G2 317 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 KIAA1958Q8N8K9 716 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 TMEM208Q9BTX3 173 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 MED18Q9BUE0 208 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 NUDT9Q9BW91 350 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 RIMS4Q9H426 269 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 NOX3Q9HBY0 568 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ZNF230Q9UIE0 474 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 AJAP1Q9UKB5 411 aaPredicted RBP6.42□□□□□ -1.38
SYNE2-216ENST00000555002 LRRC10BA6NIK2 292 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 ZFP92A6NM28 416 aa6.42□□□□□ -1.38
SYNE2-216ENST00000555002 RNASET2O00584 256 aaKnown RBP6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms