RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DUXAA6NLW8 204 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 FAM157AC9JC47 383 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 RNASET2O00584 256 aaKnown RBP11.1□□□□□ -0.63
USP28-212ENST00000544750 ZNF208O43345 1280 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 IGKV3-15P01624 115 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 CRYAAP02489 173 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 MATN1P21941 496 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 PCMT1P22061 227 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 PAX7P23759 505 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 RYKP34925 604 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 ARFIP2P53365 341 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 LGALS3BPQ08380 585 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 SPDYE7PQ495Y7 208 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 PAQR6Q6TCH4 344 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 UGT2A3Q6UWM9 527 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 C6orf120Q7Z4R8 191 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 C3orf56Q8N813 242 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 FAM169BQ8N8A8 192 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 POMGNT2Q8NAT1 580 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 OR4F15Q8NGB8 312 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 ZNF563Q8TA94 476 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 MIPOL1Q8TD10 442 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 BCL2L2Q92843 193 aaPredicted RBP11.1□□□□□ -0.63
USP28-212ENST00000544750 NAA11Q9BSU3 229 aaPredicted RBP11.1□□□□□ -0.63
USP28-212ENST00000544750 PIF1Q9H611 641 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 EXOSC3Q9NQT5 275 aaKnown RBP11.1□□□□□ -0.63
USP28-212ENST00000544750 OSGIN1Q9UJX0 560 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 PCDHGB4Q9UN71 923 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 SPEF1Q9Y4P9 236 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 USH1CQ9Y6N9 552 aa11.1□□□□□ -0.63
USP28-212ENST00000544750 TMED7-TICAM2A0A0A6YYA0 188 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 ZC3H12DA2A288 527 aaKnown RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 B4DSR2 109 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 E9PBE3 544 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 LYNX1G3V0Z9 82 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 hCG_2039718K7EN88 272 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 C1QCP02747 245 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 LYNX1P0DP58 116 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 CDH2P19022 906 aaPredicted RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 CCNA2P20248 432 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 THBS4P35443 961 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 P2RY4P51582 365 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 CLNS1AP54105 237 aaKnown RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 NME5P56597 212 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 HILS1P60008 231 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 ACTG1P63261 375 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 FUT5Q11128 374 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 DPY19L1Q2PZI1 675 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 VHLLQ6RSH7 139 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 EPGNQ6UW88 154 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 FRRS1Q6ZNA5 592 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 USP43Q70EL4 1123 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 LINGO2Q7L985 606 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 AAED1Q7RTV5 226 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 MYPOPQ86VE0 399 aaPredicted RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 ANKRD46Q86W74 232 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 CLEC4FQ8N1N0 589 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 GOLGA6L1Q8N7Z2 621 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 OR9K2Q8NGE7 335 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 MAGEE2Q8TD90 523 aaPredicted RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 LRRC8CQ8TDW0 803 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 UBASH3BQ8TF42 649 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 WDR60Q8WVS4 1066 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 CKAP2Q8WWK9 683 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 AURKBQ96GD4 344 aaPredicted RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 ZNF317Q96PQ6 595 aaPredicted RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 KCNS3Q9BQ31 491 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 SF3B5Q9BWJ5 86 aaKnown RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 RACGAP1Q9H0H5 632 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 INTS9Q9NV88 658 aaKnown RBP11.09□□□□□ -0.63
USP28-212ENST00000544750 TMEM45AQ9NWC5 275 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 TMED7Q9Y3B3 224 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 PCDHB14Q9Y5E9 798 aa11.09□□□□□ -0.63
USP28-212ENST00000544750 CLDN24A6NM45 220 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 NR5A2O00482 541 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 CFLARO15519 480 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 LGI1O95970 557 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 IFNGR1P15260 489 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 NPR2P20594 1047 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 SLC1A3P43003 542 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 HTR3AP46098 478 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 IDH2P48735 452 aaKnown RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 KCNJ10P78508 379 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 POU3F1Q03052 451 aaPredicted RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 CCNIQ14094 377 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 PDCD4Q53EL6 469 aaKnown RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 PRR31Q5SQ13 230 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 OTUD3Q5T2D3 398 aaPredicted RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 PEG10Q86TG7 708 aaKnown RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 GLCCI1Q86VQ1 547 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 SVOPLQ8N434 492 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 TMEM99Q8N816 258 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 PMM1Q92871 262 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 GCDHQ92947 438 aaPredicted RBP11.08□□□□□ -0.64
USP28-212ENST00000544750 DDIT4LQ96D03 193 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 EBF4Q9BQW3 602 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 OR51I1Q9H343 314 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 POLE3Q9NRF9 147 aa11.08□□□□□ -0.64
USP28-212ENST00000544750 PRKDCP78527 4128 aaKnown RBP11.07□□□□□ -0.64
USP28-212ENST00000544750 ARHGAP32A7KAX9 2087 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms