RNA–Protein interactions for RNA: ENST00000540963.1

CHFR-218, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2

Gene CHFR, Length 875 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-218ENST00000540963 ZNF440Q8IYI8 595 aa23.23■■□□□ 1.31
CHFR-218ENST00000540963 TESCQ96BS2 214 aa23.23■■□□□ 1.31
CHFR-218ENST00000540963 PKNOX2Q96KN3 472 aa23.23■■□□□ 1.31
CHFR-218ENST00000540963 SLC38A1Q9H2H9 487 aa23.23■■□□□ 1.31
CHFR-218ENST00000540963 MTHFD2LQ9H903 347 aaPredicted RBP23.23■■□□□ 1.31
CHFR-218ENST00000540963 MARCOQ9UEW3 520 aaPredicted RBP23.23■■□□□ 1.31
CHFR-218ENST00000540963 hCG_2039718K7EN88 272 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 HMGN4O00479 90 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 RPS4Y1P22090 263 aaKnown RBP23.22■■□□□ 1.31
CHFR-218ENST00000540963 CXCR1P25024 350 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 CALCRP30988 508 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 SCGB2A2Q13296 93 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 DPY19L1Q2PZI1 675 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 LRRC74BQ6ZQY2 392 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 CREB3L2Q70SY1 520 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 UBASH3BQ8TF42 649 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 WDR60Q8WVS4 1066 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 ZMYND19Q96E35 227 aaPredicted RBP23.22■■□□□ 1.31
CHFR-218ENST00000540963 SNX18Q96RF0 628 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 TAPBPLQ9BX59 468 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 PARD6BQ9BYG5 372 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 DPY30Q9C005 99 aa23.22■■□□□ 1.31
CHFR-218ENST00000540963 CHI3L1P36222 383 aaPredicted RBP23.21■■□□□ 1.31
CHFR-218ENST00000540963 ANXA11P50995 505 aaKnown RBP23.21■■□□□ 1.31
CHFR-218ENST00000540963 P2RY4P51582 365 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 HGFACQ04756 655 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 CASP8Q14790 479 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 HMGN2P46Q86SG4 172 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 ANKRD46Q86W74 232 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 ZBTB9Q96C00 473 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 ALKBH3Q96Q83 286 aaPredicted RBP23.21■■□□□ 1.31
CHFR-218ENST00000540963 SLC35A5Q9BS91 424 aa23.21■■□□□ 1.31
CHFR-218ENST00000540963 B4DSR2 109 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 CPSF4O95639 269 aaKnown RBP23.2■■□□□ 1.3
CHFR-218ENST00000540963 CBR1P16152 277 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 IL7RP16871 459 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 COMPP49747 757 aaPredicted RBP23.2■■□□□ 1.3
CHFR-218ENST00000540963 SELENOPP49908 381 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 TNFAIP8L3Q5GJ75 292 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 IL17RDQ8NFM7 739 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 SEMA6DQ8NFY4 1073 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 NELFAQ9H3P2 528 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 RASD1Q9Y272 281 aa23.2■■□□□ 1.3
CHFR-218ENST00000540963 TMEM129A0AVI4 362 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 A8MVM7 634 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 RPL36A-HNRNPH2H7BZ11 118 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 DBIP07108 87 aaKnown RBP23.19■■□□□ 1.3
CHFR-218ENST00000540963 IFNGR1P15260 489 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 THBS4P35443 961 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 MRPL2Q5T653 305 aaKnown RBP23.19■■□□□ 1.3
CHFR-218ENST00000540963 LINGO2Q7L985 606 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 SVOPLQ8N434 492 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 DYNLRB1Q9NP97 96 aa23.19■■□□□ 1.3
CHFR-218ENST00000540963 A0A096LPI6 279 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 WDR91A4D1P6 747 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 NR5A2O00482 541 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 CHRM4P08173 479 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 ADRM1Q16186 407 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 SYPL1Q16563 259 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 NIPAL3Q6P499 406 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 SPATA21Q7Z572 469 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 ANKFN1Q8N957 763 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 OCEL1Q9H607 264 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 ADPRHL2Q9NX46 363 aa23.18■■□□□ 1.3
CHFR-218ENST00000540963 UPK3AO75631 287 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 VENTXO95231 258 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 ARR3P36575 388 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 CLNS1AP54105 237 aaKnown RBP23.17■■□□□ 1.3
CHFR-218ENST00000540963 LGALS3BPQ08380 585 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 WBP2NLQ6ICG8 309 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 GLCCI1Q86VQ1 547 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 EPHX4Q8IUS5 362 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 NUDCD3Q8IVD9 361 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 CCDC36Q8IYA8 594 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 TRIML2Q8N7C3 387 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 ZNF781Q8N8C0 355 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 CKAP2Q8WWK9 683 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 CCDC115Q96NT0 180 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 AKTIPQ9H8T0 292 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 SEC61A2Q9H9S3 476 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 BTNL2Q9UIR0 455 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 RCE1Q9Y256 329 aa23.17■■□□□ 1.3
CHFR-218ENST00000540963 A0A096LPE4 126 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 A0A1W2PPZ6 126 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 FRS3O43559 492 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 ZNF500O60304 480 aaPredicted RBP23.16■■□□□ 1.3
CHFR-218ENST00000540963 IGFBP1P08833 259 aaPredicted RBP23.16■■□□□ 1.3
CHFR-218ENST00000540963 TFPTP0C1Z6 253 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 EVX1P49640 407 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 TUBA1BP68363 451 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 TUBA4AP68366 448 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 ROR2Q01974 943 aaKnown RBP23.16■■□□□ 1.3
CHFR-218ENST00000540963 TRIP10Q15642 601 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 KRT71Q3SY84 523 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 PRAMEF8Q5VWM4 474 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 PRAMEF7Q5VXH5 474 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 RINLQ6ZS11 566 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 TUBA1AQ71U36 451 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 RNF130Q86XS8 419 aa23.16■■□□□ 1.3
CHFR-218ENST00000540963 PEX5LQ8IYB4 626 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms