RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 KLF4O43474 513 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 NDUFB5O43674 189 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 CDC40O60508 579 aaKnown RBP eCLIP7.58□□□□□ -1.26e-6■■■■■ 29.1
CHD4-208ENST00000540960 TPST2O60704 377 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 BCAS1O75363 584 aaPredicted RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 WBP4O75554 376 aaKnown RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 KLF7O75840 302 aaPredicted RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 ATE1O95260 518 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 UTS2O95399 124 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 HIST1H2ABP04908 130 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TPOP07202 933 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 CTSBP07858 339 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SAGP10523 405 aaPredicted RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 IFI30P13284 250 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 APEHP13798 732 aaKnown RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 GABRB1P18505 474 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 FMO3P31513 532 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SOX18P35713 384 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SLC1A3P43003 542 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 CASP6P55212 293 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TUBA1BP68363 451 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 EMX1Q04741 257 aaPredicted RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 C17orf67Q0P5P2 114 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 CBFBQ13951 182 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 MFSD13AQ14CX5 517 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 MAPK14Q16539 360 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ELOA3BQ3SY89 546 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ARHGAP11AQ6P4F7 1023 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SMARCD3Q6STE5 483 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TMEM205Q6UW68 189 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 NPSR1Q6W5P4 371 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ZNF620Q6ZNG0 422 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 GDPGP1Q6ZNW5 385 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 DGAT2L6Q6ZPD8 337 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 AHSA2Q719I0 299 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TUBA1AQ71U36 451 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 HIST3H2AQ7L7L0 130 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ANKRD37Q7Z713 158 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ANKRD13BQ86YJ7 626 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SIMC1Q8NDZ2 872 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 FAM71CQ8NEG0 241 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ELOA3Q8NG57 546 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 PHOSPHO1Q8TCT1 267 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 CNOT9Q92600 299 aaKnown RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 HIST1H2ACQ93077 130 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ISOC1Q96CN7 298 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SGTBQ96EQ0 304 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 FER1L6-AS2Q96M78 137 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 GAL3ST4Q96RP7 486 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 IL4I1Q96RQ9 567 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SECISBP2Q96T21 854 aaKnown RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 ZNF426Q9BUY5 554 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 MND1Q9BWT6 205 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TSSK6Q9BXA6 273 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 YIPF3Q9GZM5 350 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 SIAEQ9HAT2 523 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ACOT13Q9NPJ3 140 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 INPP5EQ9NRR6 644 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 P4HTMQ9NXG6 502 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ZNF226Q9NYT6 803 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 TVP23BQ9NYZ1 205 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 KLHL21Q9UJP4 597 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 ICAM5Q9UMF0 924 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 EXOSC1Q9Y3B2 195 aaKnown RBP7.58□□□□□ -1.2
CHD4-208ENST00000540960 CHST2Q9Y4C5 530 aa7.58□□□□□ -1.2
CHD4-208ENST00000540960 LOC102723996A0A087X1L8 192 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 MYOCOSA0A1B0GUC4 107 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 SLC22A31A6NKX4 558 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 CLDN24A6NM45 220 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 H3BSA7 217 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 SOCS6O14544 535 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 ADAM10O14672 748 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 IMPA2O14732 288 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 TLX2O43763 284 aaPredicted RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 XPNPEP2O43895 674 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 TSPAN2O60636 221 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 TOXO94900 526 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 NDUFB2O95178 105 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 RAB36O95755 333 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 MT-ATP6P00846 226 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 HOXD4P09016 255 aaPredicted RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 PEPDP12955 493 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 ZNF3P17036 446 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 HK1P19367 917 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 ATP6V1E1P36543 226 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 ACAA2P42765 397 aaKnown RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 CENPAP49450 140 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 NR0B1P51843 470 aaKnown RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 SNRPNP63162 240 aaKnown RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 RNF4P78317 190 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 NKX6-1P78426 367 aaPredicted RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 ST3GAL4Q11206 333 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 PMS2P3Q13401 168 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 SNTB1Q13884 538 aaKnown RBP7.57□□□□□ -1.2
CHD4-208ENST00000540960 PGGHGQ32M88 737 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 GPR107Q5VW38 600 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 NXNL2Q5VZ03 156 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 ANKRD34AQ69YU3 496 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 GTF2IRD2BQ6EKJ0 949 aa7.57□□□□□ -1.2
CHD4-208ENST00000540960 PAPD4Q6PIY7 484 aaKnown RBP7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms